Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2a03
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   6.0  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   6.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 46  FFLFYLNPLTWKE*IHHNKSV 108
           F  F  N  TWK  + HN S+
Sbjct: 538 FCYFRRNAATWKNAVRHNLSL 558


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +1

Query: 592 HWKQTFKQKYTEIGLL 639
           H+++T + +YT +GL+
Sbjct: 134 HYRRTRRDRYTNLGLV 149


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 450 KELSVVGMMSDCSVQTYEIMVSR 382
           K+   VGM  +C V  Y+  V R
Sbjct: 42  KKCLTVGMRPECMVPEYQCAVKR 64


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -1

Query: 112 PLHSYCDEFILSKLAD*DKIKKNIVK 35
           PLH+ C++  +S  A  +++K  +++
Sbjct: 445 PLHTECEDLSVSGEAGIEEVKSPVLR 470


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -1

Query: 112 PLHSYCDEFILSKLAD*DKIKKNIVK 35
           PLH+ C++  +S  A  +++K  +++
Sbjct: 445 PLHTECEDLSVSGEAGIEEVKSPVLR 470


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,467
Number of Sequences: 438
Number of extensions: 3218
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)