Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2a02
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.60 
SB_13761| Best HMM Match : MoeZ_MoeB (HMM E-Value=8.7)                 30   2.4  
SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_42751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_28710| Best HMM Match : Transposase_11 (HMM E-Value=4.9)            29   3.2  
SB_2664| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_51196| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_34801| Best HMM Match : Vicilin_N (HMM E-Value=0.3)                 28   9.8  

>SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
 Frame = +3

Query: 375  LDVQVLPGNLEVIVPTLRKLE---GISNWCSRNGTVRSLFQCRAAPDSF----WISGDFG 533
            LD   L   LE +VP+++ L+   G+S WC+R   +R   +   + ++F      SG +G
Sbjct: 994  LDAVALQTCLEGLVPSVQDLQDHDGVSRWCARVTCLRQTVETMTSKENFDKTDEKSGGYG 1053

Query: 534  CFVYNRSSHC 563
                N   HC
Sbjct: 1054 ERTQNIIKHC 1063


>SB_13761| Best HMM Match : MoeZ_MoeB (HMM E-Value=8.7)
          Length = 275

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 381 HPAHHNQKSHEGKCYQQNLYNIYVVANSV 295
           H  H N+K   GKCY  ++Y+IY + N++
Sbjct: 245 HIYHGNRKPFSGKCY--SVYSIYALRNAI 271


>SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 267 SGR*NYGEERHYLLQRRCYTSFADSICLRDSSDCDELDVQVLPGNLEVIV 416
           S + +YG   H+  + R  TS +  + L D S C   D  V+  N+ + V
Sbjct: 606 SSQSSYGTSGHFNTRIRAMTSTSPLVELNDQSSCIRTDASVVVTNIAISV 655


>SB_42751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 97  TDNVLRYNEALRKLVKWVEKVQMH 168
           +D +LRY   +RK VKW  +V  H
Sbjct: 39  SDQMLRYYTCIRKTVKWYRRVLFH 62


>SB_28710| Best HMM Match : Transposase_11 (HMM E-Value=4.9)
          Length = 302

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 97  TDNVLRYNEALRKLVKWVEKVQMH 168
           +D +LRY   +RK VKW  +V  H
Sbjct: 198 SDQMLRYYTCIRKTVKWYRRVLFH 221


>SB_2664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/52 (26%), Positives = 30/52 (57%)
 Frame = +1

Query: 16  KPVRNPCVQINIM*LKIKIKRPDEIK*TDNVLRYNEALRKLVKWVEKVQMHH 171
           K +R+P + I ++ L+  +++P+E+     V RY   + +L +W ++  M H
Sbjct: 25  KWLRSPWLSIGLLVLETLLQKPEEL----IVRRYYICINRLYRWYKQCTMQH 72


>SB_51196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +3

Query: 354 DSSDCDELDVQVLPGNLEVIVPTLRKL 434
           D    DEL  QV  GNLEV VP   K+
Sbjct: 198 DPQTVDELRAQVFMGNLEVKVPNTDKI 224


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 236 SFISCRLPYHERTVKLWGRKTLF 304
           SF  CR  + +++++LWGR  LF
Sbjct: 575 SFKGCRKRFTQKSLRLWGRMDLF 597


>SB_34801| Best HMM Match : Vicilin_N (HMM E-Value=0.3)
          Length = 451

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 558 VKNDYKQSNQNHH*SKNCQELPDIERETA 472
           V+ DY+ +N N++ + N  E  +++RE A
Sbjct: 263 VRTDYQNNNNNNNNNNNNNETEEVDREAA 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,836,443
Number of Sequences: 59808
Number of extensions: 393904
Number of successful extensions: 867
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)