Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2a01
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.0  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   4.0  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    26   5.3  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.3  

>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 241 PTVDYYKVEFRRPIRQIRHDTLSLTRYKSVL 333
           PT+D+    FR   + +  D LSL+ Y S++
Sbjct: 254 PTIDFLSSHFRVDDKLVAKDLLSLSAYSSLI 284


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 107 NYNEAVVFLNSPSSPTEPNPFKR*PSNRLWAQNKFKSDRPVL 232
           N +  +++LN+  +P +   ++  P N  W ++KF SD PVL
Sbjct: 359 NNHILLLYLNALDAPKQLLCYEADPKNLYWDKDKF-SDIPVL 399


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 306 QPNQIQISARSQFYSTTAIPPLKQEHI 386
           +PN+   + + Q YS T +PP +Q+ I
Sbjct: 18  EPNETGSTLKHQLYSLTQVPPERQKVI 44


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 262 VEFRRPIRQIRHDTLSLTRYKSVLGLSSIVQRPSH 366
           +EF      + H   SLT + ++LGL S+V   +H
Sbjct: 433 IEFAHEDSVLGHSKPSLTEFHAILGLYSLVISYNH 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,896
Number of Sequences: 5004
Number of extensions: 68746
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)