Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29p22
(486 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 171 3e-43
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 167 5e-42
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 30 1.1
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 29 2.0
06_01_0776 - 5805555-5805639,5805769-5806008,5806103-5806173,580... 27 6.0
12_01_0321 + 2447726-2447790,2448114-2448320,2449259-2449392,244... 27 8.0
09_02_0608 + 11194889-11195134,11195185-11195406 27 8.0
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 171 bits (415), Expect = 3e-43
Identities = 83/130 (63%), Positives = 99/130 (76%), Gaps = 1/130 (0%)
Frame = +3
Query: 3 MPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTT-QGRWPKKSAEFLLQLLRN 179
+PL +A RYL++VI K+ IPFRR+ GGVGR AQ K + QGRWP KSA F+L LL+N
Sbjct: 51 LPLVKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAKSARFILDLLKN 110
Query: 180 AESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAV 359
AESNAD K LDVD L + HIQVN+A RRRTYRAHGRINPYMSSPCH+E+ LSE+E+AV
Sbjct: 111 AESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHVELILSEKEEAV 170
Query: 360 ARVAPTDDAP 389
+ T AP
Sbjct: 171 KKEPETTIAP 180
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 167 bits (405), Expect = 5e-42
Identities = 80/122 (65%), Positives = 96/122 (78%), Gaps = 1/122 (0%)
Frame = +3
Query: 3 MPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRN 179
+PL +A RYL++VI K+ IPFRR+ GGVGR AQAK + QGRWP KSA F+L LL+N
Sbjct: 39 LPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKN 98
Query: 180 AESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAV 359
AESNA+ K LDVD L + HIQVN+A RRRTYRAHGRINPYMSSPCHIE+ LSE+E+ V
Sbjct: 99 AESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPV 158
Query: 360 AR 365
+
Sbjct: 159 KK 160
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 69 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQ 242
R +G V RC R K EF Q+ + +E S + + L + + I H+
Sbjct: 1011 RNLSGRVRRCRMHDIIRLLALR--KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLS 1068
Query: 243 VNRAPCLR 266
+ APCLR
Sbjct: 1069 GSSAPCLR 1076
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 29.1 bits (62), Expect = 2.0
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +3
Query: 30 LKNVIEKKECIPFRRFNGGVGRCAQAKQ--FGTTQGRWPKKSAEFLLQLLRNAESNAD-- 197
L N++E E R GR A+ Q + RWP ++AE RN E NA+
Sbjct: 400 LDNMVEMHETQVDNRLQDEAGRDARFWQPSLDDSLDRWPNETAE---DAERNWEDNAEEL 456
Query: 198 -NKTLDVDRLVIDHIQ 242
++T++ D DH+Q
Sbjct: 457 HSETMEDDAREHDHLQ 472
>06_01_0776 -
5805555-5805639,5805769-5806008,5806103-5806173,
5806274-5806627
Length = 249
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 383 CPSEEKAFQEKACASKGEDDE 445
C EE+A EK C GED +
Sbjct: 108 CSGEEEAMAEKVCTQAGEDHD 128
>12_01_0321 +
2447726-2447790,2448114-2448320,2449259-2449392,
2449481-2449668,2450204-2450359
Length = 249
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 236 HSGKSRALPTQT-YIPCSRSHQPLHVVSLPHRSMSQ 340
HSG R+ P+ T P P HV S PHR Q
Sbjct: 8 HSGLPRSPPSATGRQPYEAQFGPFHVPSRPHRGPDQ 43
>09_02_0608 + 11194889-11195134,11195185-11195406
Length = 155
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 250 ARPAYADVHTVLTVASTPTCRLPATS 327
AR A +D+ T+L + + P RLP TS
Sbjct: 24 ARRALSDLQTILGLGAAPPQRLPQTS 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,650,414
Number of Sequences: 37544
Number of extensions: 243852
Number of successful extensions: 732
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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