Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29p22
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   194   3e-50
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   116   2e-31
AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl t...    29   1.4  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z81463-3|CAB03847.1|  307|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  194 bits (473), Expect = 3e-50
 Identities = 92/128 (71%), Positives = 106/128 (82%)
 Frame = +3

Query: 3   MPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNA 182
           MPLRRA  +L +V E KE +PFRRF+GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NA
Sbjct: 41  MPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNA 100

Query: 183 ESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVA 362
           ESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V+
Sbjct: 101 ESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVS 160

Query: 363 RVAPTDDA 386
           +  PTDDA
Sbjct: 161 K--PTDDA 166


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  116 bits (278), Expect(2) = 2e-31
 Identities = 56/75 (74%), Positives = 63/75 (84%)
 Frame = +3

Query: 162 LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 341
           L LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125

Query: 342 EREDAVARVAPTDDA 386
           E+ED V++  PTDDA
Sbjct: 126 EKEDVVSK--PTDDA 138



 Score = 36.7 bits (81), Expect(2) = 2e-31
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +3

Query: 3   MPLRRAVRYLKNVIEKKECIPFRRF 77
           MPLRRA  +L +V E KE +PFRRF
Sbjct: 41  MPLRRAQAFLNHVKEHKEIVPFRRF 65


>AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl trna
           synthetase protein2 protein.
          Length = 551

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -1

Query: 459 LMSIPSSSSPFDAQAFSWKAFSSLGHHQ*GLP*RQHLRVR*DILRCGRETTCRG 298
           L+S   +   F + A+  +A ++L  H+  L    HL  + D+LRC R T+C G
Sbjct: 334 LLSGEGADELFGSYAYMQRAPNALHLHKEILRRMHHLH-QYDVLRCDRSTSCHG 386


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = +3

Query: 135 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 296
           W K+    +  LL  AE++    + D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 297 NPYMSSPCHIEVCLSER 347
           NP+  SPC ++   S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -1

Query: 324 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCC 196
           CG +T  R  C  +    +C G   +L  C   +     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


>Z81463-3|CAB03847.1|  307|Caenorhabditis elegans Hypothetical
           protein C06B8.4 protein.
          Length = 307

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -3

Query: 472 LLFNPYVYSLI---IFSF*RASFFLESFFFAGAS 380
           L F  + YSLI   IFSF   +++L + FFAG S
Sbjct: 118 LYFFTFPYSLIFTGIFSFMTLNWWLSAVFFAGES 151


>AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical
           protein F33H12.6 protein.
          Length = 1360

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
 Frame = +3

Query: 135 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 296
           W K+    +  LL  AE++    + D+D++V   I   +  P L R       +R  G  
Sbjct: 472 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPCGAQ 531

Query: 297 NPYMSSPCHIEVCLSER 347
           NP+  SPC ++   S+R
Sbjct: 532 NPH--SPCMVDGHCSKR 546


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,433,146
Number of Sequences: 27780
Number of extensions: 199804
Number of successful extensions: 556
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)