Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29p20
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    30   0.100
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    27   0.93 
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    25   4.9  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   4.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   6.5  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    24   8.6  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    24   8.6  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    24   8.6  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    24   8.6  

>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 30.3 bits (65), Expect = 0.100
 Identities = 18/60 (30%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
 Frame = +2

Query: 170 RGKQKLYNKMEASYREEEAKKKIIRDIELAKLKKKIDAE--EKETIRLLETGKLFESDKK 343
           R +Q+ +N+     +  EA+++ ++D E  + K+ ++ E  EKE IRL+E  K  E++++
Sbjct: 107 RLEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKENEQR 166


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.1 bits (57), Expect = 0.93
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 179 QKLYNKMEASYREEEAKKKIIRDIELAKLKKKIDAEEKETIRLLE 313
           ++L  + E   RE+E K +    I  AK  K+++  EKE IRL E
Sbjct: 96  ERLKREKERQQREQEKKLREQEKIA-AKKMKELEKLEKERIRLQE 139


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 188 YNKMEASYREEEAKKKIIRDIELAKLKKKIDAEEKE 295
           Y   E   REEEAKK      E A++++ + A E E
Sbjct: 206 YRDPEEVEREEEAKKAAAAAAEEAQVEEAVAAAEFE 241


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 164 YARGKQKLYNKMEASYREEEAKKKIIRDIELAKLKKKIDAEEKETIRLLET 316
           Y+  K   Y +        E  K  ++  + A   KK+DAE +ET  LL T
Sbjct: 159 YSCNKLNSYMRQTKKMTGRELDKYNLKIRQAALAVKKMDAEYRETNELLLT 209


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 185  LYNKMEASYREEEAKKKIIRDIELAKLKKKIDAEEKETIRLLET 316
            LY   EAS  +  A +K  RD+ +  L      E K++  LLE+
Sbjct: 2420 LYILQEASINDR-ASEKCYRDLTVKSLNNSQQKEVKKSTGLLES 2462


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 182  KLYNKMEASYREEEAKKKIIRDIELAKLKKKIDAE 286
            K Y KM     E+E     I D+ L  L +K D E
Sbjct: 3023 KAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDNE 3057


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 170 RGKQKLYNKMEASYREEEA 226
           +GK++L NK+  SY EE A
Sbjct: 20  KGKKQLENKILHSYEEESA 38


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 171 RAYIIPAIKKANLKPLINGETGCG 100
           R  II A+  + L  +I+G+TGCG
Sbjct: 637 RETIIDAVNNSQLL-IISGDTGCG 659


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 11  VFLLIFDRSPLKLHFSVLFDEVIMXLPYGPPQPVSPLI 124
           VFL + D +  +   + L D VI+ L   PP  +  LI
Sbjct: 124 VFLFVMDTAVDESELTALKDAVIVSLSLLPPDAIVGLI 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,217,207
Number of Sequences: 5004
Number of extensions: 19000
Number of successful extensions: 87
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)