Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29p18
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 29 0.60
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 28 1.0
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 28 1.0
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom... 27 1.8
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 27 2.4
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 27 2.4
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 27 3.2
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 26 4.2
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.6
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch... 26 5.6
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 25 9.7
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 9.7
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 9.7
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 29.1 bits (62), Expect = 0.60
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +1
Query: 412 GQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELENGSGTSESSTVVK 591
G+ +KK + +L+EK+F P S KP K H V D+E+EN E S V
Sbjct: 1090 GELVVSKKKKKDLIVELKEKKFQPIS---KPKKGHLV-----DLEVENALAEEEQSGDVS 1141
Query: 592 ID 597
D
Sbjct: 1142 QD 1143
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 28.3 bits (60), Expect = 1.0
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = +1
Query: 319 NSNAEDSRTVCKYGEKCYQKNPE---HHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYS 489
NSN + R+ + ++ Y + + Y+ + E+ + + R +RF+ Y
Sbjct: 331 NSNRDRKRSSSRSDDREYHRRSDGRYDRSNYRDDYRHRRKERDHRDDQSSFRNERFSNYY 390
Query: 490 SDDKP-AKQHKVGDKKPDIELENGS 561
DD+ K+ G+K D L + S
Sbjct: 391 GDDRSYHKRRNTGNKNCDDHLRDKS 415
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 430 EKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELENGSGTSESSTVVKIDTV-N 606
+ ++K+PGKL K S P + K + P ++E + S+ S ++ +DT+ N
Sbjct: 514 DNSSQKSPGKLSSKGLLNSFSPISPFSKSKSHNHHPSSQVEKSTSNSKGS-MLPLDTLYN 572
Query: 607 PIHALKLPKNITYY 648
+ +L +++ Y
Sbjct: 573 NKLSFRLDESLVRY 586
>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 177
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +2
Query: 353 NTAKSVIKKIPSTTKNTN--IQGKQELLRKKMRRIPESSEKNVLIHIRAMTNLLSSIK*E 526
+TA + + P T+KN ++ + +RK+ + E ++KN+ ++MT+ + ++
Sbjct: 107 STAATFMFCFPKTSKNIGAFVEKRFPAIRKQRMLVLEQTQKNIQNAQKSMTSAVEGVQKH 166
Query: 527 IKNLTSN*KMD 559
+N K D
Sbjct: 167 YENAVKKIKGD 177
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1
Query: 183 LGTNIQIISVESKINNHLFCTFMISYYLCGLNVAYEF*LTLRHF 52
L T ++I ++ + FCTF + +Y V TL HF
Sbjct: 163 LPTRAELILFDNVLGKAFFCTFQLLFYAFRPLVVRRLPFTLMHF 206
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 499 KPAKQHKVGDKKPDIELENGSGTSESSTVVKIDT--VNPIHALKLPKNITYYDSSD 660
KP + K D+E+E +G E++ ++ DT V I K DSSD
Sbjct: 41 KPVAKETTVLTKKDVEVEEANGVEEAAETIESDTKEVQNIKPKSKKKKKKLNDSSD 96
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 386 STTKNTNIQGKQELLRKKMRRIPESSEKNVLIHIRAMTNLLSSIK 520
S K N++GKQ+LL + ++ E H+ + LLS ++
Sbjct: 231 SAKKLLNVEGKQKLLASEFLKLGERPGGFFRTHLITLYELLSEVR 275
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 26.2 bits (55), Expect = 4.2
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +1
Query: 319 NSNAEDSRTVCKYGEKCYQKNPEHHKK--YKHPGQAGAFEKKNEKNPGKLREKRFNPYSS 492
N E R + E+ EH K+ ++ + FE+K + K EK +
Sbjct: 31 NIRVEHERALLGLQEQLSMAQLEHKKQKIFERYKKVRFFERKKAERRIKQLEKSLKDETM 90
Query: 493 DDKPAKQHKVGDKKPDIEL 549
DD+ KQ + +K I+L
Sbjct: 91 DDEKRKQCEKSMRKCQIDL 109
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/59 (22%), Positives = 27/59 (45%)
Frame = +1
Query: 430 EKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELENGSGTSESSTVVKIDTVN 606
E+KNEKNP + + ++ +QH ++ + +ES+T ++ +N
Sbjct: 62 EEKNEKNPIEEANEENESVAATSNERQQHDASNQPSQAAQTTINKNTESATPKTVNEIN 120
>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
Usp106|Schizosaccharomyces pombe|chr 3|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 412 LDVCIFCGAR-DFFDNTFRRICIQFSNLQHLNYKLLTSL 299
L VC C A DN RR+ FS HL Y +L ++
Sbjct: 187 LQVCDICSAYLSRLDND-RRLADHFSGKMHLGYAMLRNI 224
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.0 bits (52), Expect = 9.7
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +2
Query: 353 NTAKSVIKKIPSTTKNTNIQGKQ----ELLRKKMRRIPESSEKNVLIHIRAMTNL 505
N K++ + I + N KQ E +KK P+ SEK +H+RA L
Sbjct: 581 NAVKTLDEDITPQSSNWQTVAKQIIFPEAYKKKDALRPDVSEKVFTVHVRANKRL 635
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = -1
Query: 501 FVIARIWIKTFFSELSGIL----LIFFLKSSCL 415
FV+ IWI T +E+ GIL +IF L S L
Sbjct: 589 FVLGIIWISTIANEVVGILRALGVIFNLNESIL 621
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 466 EKRFNPYSSDDKPAKQHKVGDKKPDIELENGSGTSESSTVVKIDTV 603
+ N YSS PA +K ++ SGTS S + +D++
Sbjct: 162 DANINSYSSFSDPASSYKPSLPSVPFGFQHISGTSPSPGFITLDSL 207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,949
Number of Sequences: 5004
Number of extensions: 56173
Number of successful extensions: 220
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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