Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29p18
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149 34 0.088
12_02_1096 + 26050224-26051058,26051599-26051831,26051940-260522... 31 0.62
05_01_0601 + 5390484-5391692 31 0.62
11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415 30 1.4
07_01_0463 + 3502708-3503535 29 2.5
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 29 3.3
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 29 3.3
08_02_0584 - 19010345-19010656,19010959-19011018 29 4.4
01_05_0265 + 20188160-20188211,20188291-20189019,20189103-201892... 29 4.4
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 28 5.8
12_02_0093 + 13536684-13536782,13537055-13537057,13537626-135376... 28 7.6
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874... 28 7.6
>07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149
Length = 282
Score = 34.3 bits (75), Expect = 0.088
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = +1
Query: 370 YQKNPEHHKKYKHPGQAGAFEKKN--EKNPGKLREKRFNPYSSDDKPAKQHKVGDKK--- 534
+ K E K+ K P QA EKK EK P + ++ D+K ++ K +KK
Sbjct: 77 FGKLAEAKKEEKKPDQAKKEEKKQPEEKKPEEKKKSEEEKKKGDEKKPEEGKKEEKKEEK 136
Query: 535 PDIELENGSGTSESSTVVKIDTVN 606
P ++ E + + SST V + N
Sbjct: 137 PKVKEETKATPAPSSTTVNLQFTN 160
>12_02_1096 +
26050224-26051058,26051599-26051831,26051940-26052230,
26052860-26052988,26053082-26053255,26053334-26053547,
26053881-26053968,26054195-26054239,26056969-26057015,
26057441-26057727,26057812-26058051,26058141-26058257
Length = 899
Score = 31.5 bits (68), Expect = 0.62
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +1
Query: 352 KYGEKCYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDK 531
K+ +K K+ EH KK+KH + + +K +K+ K ++K + S D K H+ K
Sbjct: 806 KHKDKDRDKDKEH-KKHKHRHKDRSKDKDKDKDKDKKKDKSGHHDSGGDHSKKHHEKKRK 864
Query: 532 KPDIE 546
+E
Sbjct: 865 HEGME 869
>05_01_0601 + 5390484-5391692
Length = 402
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -2
Query: 569 DVPDPFSNSMSGFLSPTLCCLAGLSSL 489
+V D NS+SG L PTL CLAG+ L
Sbjct: 256 EVLDLSYNSLSGHLPPTLSCLAGIEVL 282
>11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415
Length = 126
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 323 QMLKIRELYANTAKSVIKKIPSTTKNTNIQGKQELLRKKMRRIPESSEKNV 475
++ KI EL AK+ +KK P KN + K++ +KK ++ E E +V
Sbjct: 35 ELKKILELRKKKAKAKVKKKPKKKKNKKAK-KKKKKKKKKKKEEEEEESDV 84
>07_01_0463 + 3502708-3503535
Length = 275
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +1
Query: 358 GEKCYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKP 537
G+K ++ E K + G +K ++ GK +EK+ D+K K+ K DK
Sbjct: 102 GKKKEKEMKEKKKDKSDKKEEGKKKKDGDEEEGKKKEKK-KDKDGDEKEGKKEKKKDKDG 160
Query: 538 DIELE 552
D E E
Sbjct: 161 DEEEE 165
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 29.1 bits (62), Expect = 3.3
Identities = 28/90 (31%), Positives = 40/90 (44%)
Frame = +1
Query: 322 SNAEDSRTVCKYGEKCYQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDK 501
SN EDS K +K PEH K+PG G + G L EK + +K
Sbjct: 175 SNFEDSTPNAKVD---IEKQPEHEDATKNPGGPG-------QGDG-LTEKPLESELTPEK 223
Query: 502 PAKQHKVGDKKPDIELENGSGTSESSTVVK 591
P++ V +K+ ++ SESST V+
Sbjct: 224 PSQDDIVAEKQSQSSVDVPK-QSESSTTVQ 252
>01_06_0481 -
29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -3
Query: 433 SQKLLLALDVCIFCGARDFFDNTFRRICIQFSN---LQHLNYKLLTSLQINNFQKEKKW 266
S KL+ LD+ G F N+F ++CI F+N QH N + Q +++ W
Sbjct: 427 SDKLIGVLDIY---GFESFKTNSFEQLCINFTNEKLQQHFNQNVFKMEQEEYTREQINW 482
>08_02_0584 - 19010345-19010656,19010959-19011018
Length = 123
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = +1
Query: 385 EHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELENGSG 564
EHHK+ K + A E K EK + +EK + KPAK+ K +K + E
Sbjct: 11 EHHKEEKKDKEH-AKEAKPEKEKKEKKEKNGEEAA---KPAKEKKEKKEKKEKGKEKKEK 66
Query: 565 TSESSTVVKI 594
E++ V K+
Sbjct: 67 VEETTDVAKL 76
>01_05_0265 +
20188160-20188211,20188291-20189019,20189103-20189231,
20189857-20189938,20190034-20190166,20190269-20190340,
20190478-20190573,20190651-20190764,20190838-20191050,
20191144-20191242,20191328-20191488,20191589-20191685,
20191828-20191989,20192068-20192148,20192242-20192320,
20192414-20192550,20192638-20192688,20192776-20192844,
20193583-20193700,20194142-20194197
Length = 909
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/71 (22%), Positives = 27/71 (38%)
Frame = +1
Query: 376 KNPEHHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELEN 555
+ P H + G A A +++ G+ P S+DD P + P+ +
Sbjct: 66 ETPPHPGRRTPSGGAAARQQRQNWTGGRFPPTPSTPMSTDDVPLSSEAGDEDTPETDGGG 125
Query: 556 GSGTSESSTVV 588
G G +T V
Sbjct: 126 GGGAGADATPV 136
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 409 PGQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELENGSGTSESSTVV 588
P +AG E K E + + + + ++ D+PAK+ + P E + E TVV
Sbjct: 162 PPEAGTEEPKAEASSEEAKTEEPKAEAAADEPAKEESKAEAAPAEEAKPAEPEPEEKTVV 221
>12_02_0093 +
13536684-13536782,13537055-13537057,13537626-13537654,
13539481-13539572,13539979-13540049,13540178-13540266,
13540896-13541019,13541111-13541394,13541831-13541960,
13542482-13543111
Length = 516
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = -3
Query: 547 IRCQVFYLLLYAA*QVCHRSNMD*NVFL*AFRDSSHFFSQKLLLALDVCIFCGARDFFDN 368
+RC+V Y L + SN N R HF S L +D+ F G D F
Sbjct: 216 LRCRVNYHALRFKPHIMKISNEIVN----KLRSEGHFMSIHLRFEMDMLAFAGCIDIFTP 271
Query: 367 TFRRICIQF 341
++I I++
Sbjct: 272 EEQKILIEY 280
>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
8746665-8746893,8747314-8747420,8747560-8747622,
8747883-8747983,8748996-8749090,8749330-8749350,
8749987-8750082,8750188-8750308,8750415-8750570,
8750679-8750869,8751207-8751478,8751853-8751954,
8752006-8752038,8752132-8752308,8752397-8752466,
8752512-8752585,8752667-8752908,8752983-8753129,
8753526-8753751,8753893-8753970,8754378-8754521,
8754829-8755008,8755335-8755394,8755484-8755523,
8758653-8759137
Length = 1294
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 370 YQKNPEHHKKYKHPGQAGAFEKKNEKNPGKLREK-RFNPYSSDDKPAKQHKVGDKKPDIE 546
Y+ + ++ K K PG+ G +KN G + + KP QH +G + +
Sbjct: 1113 YEVDGWYYVKKKRPGRDGKTAEKNRLLAGGWQGGYTYTSPKPQPKPGNQHAMGRGEQEAA 1172
Query: 547 LENGSGTSE 573
+G G+ E
Sbjct: 1173 ASHGFGSME 1181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,969,688
Number of Sequences: 37544
Number of extensions: 294596
Number of successful extensions: 971
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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