Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29p14
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho...    41   2e-04
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    29   0.60 
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   3.2  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   3.2  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    26   5.6  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    26   5.6  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   5.6  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   5.6  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    26   5.6  
SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.4  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   7.4  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   9.8  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    25   9.8  

>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
           5',5'''-p1,p6-hexaphosphate hydrolase Aps1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 21/69 (30%), Positives = 37/69 (53%)
 Frame = +1

Query: 157 RRAACICVRSDAETEVLLVTSSRRPDNWIXXXXXXXXXXXXXXTAMREVLEEAGVIGKLG 336
           R AA +   S  + +VLLV+S+++  +W+               A+RE  EE G++G + 
Sbjct: 42  RLAAGVVALSADKRKVLLVSSAKKHPSWVVPKGGWEADESVQQAALREGWEEGGLVGHIT 101

Query: 337 RCLGVFENR 363
           R LG F+++
Sbjct: 102 RSLGSFKDK 110


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +1

Query: 487 LALHKPIQRHYLQQLRRSKQNKQDDQTTYN 576
           L +H+ +QRH+++ LR +   + D++  +N
Sbjct: 787 LEIHQRLQRHFVELLRPALSERNDEEAIFN 816


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 469 DDALAQLALHKPIQRHYLQQLRRSKQNKQD 558
           DD LA L LH+ ++  +LQQ   SK N QD
Sbjct: 553 DDKLAYLELHEALKLAFLQQYDFSK-NVQD 581


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 469 DDALAQLALHKPIQRHYLQQLRRSKQNKQD 558
           DD LA L LH+ ++  +LQQ   SK N QD
Sbjct: 553 DDKLAYLELHEALKLAFLQQYDFSK-NVQD 581


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
 Frame = +1

Query: 412 LPEWEDSRLMGRKRQWFSIDD--ALAQLALHKPIQRHYLQQLRRSKQNKQD 558
           LP+W      G +R W   DD  A+    L     R Y +  +  K   +D
Sbjct: 525 LPQWVRRLFKGNRRFWEDPDDRKAMDNATLEMATSRSYSEDGKNEKTTHED 575


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 336 TMSWSIREPRTQTPNRGLCYDCDPRTTRVGG 428
           T   ++ E RT+    G+ Y CDPR     G
Sbjct: 38  TQDPALNEVRTEKLKNGVTYVCDPRPGHFSG 68


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/82 (21%), Positives = 36/82 (43%)
 Frame = -2

Query: 303 YLPHRSDRRLLFRLYSPARHNPVVGPSRRRHQQDLCFGI*THANTCRPSPKTLVVIYPYR 124
           +LP  +   LL +   PA+ +P +GP+++  QQ     I +  +          V+ P +
Sbjct: 56  HLPRSTLHPLLSQQQQPAQQSPSLGPAQQNIQQPPSVSIASQPHYAEAIVPIQQVLQPQQ 115

Query: 123 IRLLLYHFCLQTRKHERNERSQ 58
            R L  +    T   +++ + Q
Sbjct: 116 YRQLPPNMVAATNAPQQHPQLQ 137


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 365 SRFSNTPRHRPSFPITPASSSTSRIA 288
           +R ++TP +  S P  P+SSST  I+
Sbjct: 107 TRLTSTPSNSSSLPSIPSSSSTPSIS 132


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 350 TPRHRPSFPITPASSSTSR 294
           TPRH+P F ++ A SS ++
Sbjct: 618 TPRHKPKFDLSKALSSVAK 636


>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 261 YSPARHNPVVGPSRRRHQQDL 199
           Y  A HNP V    RRH ++L
Sbjct: 87  YKAAMHNPKVSQKGRRHAKEL 107


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 410 NYPSGRIQDSWDVRGN 457
           NY S R++D WD++ N
Sbjct: 354 NYESSRVEDFWDIQLN 369


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 478 LAQLALHKPIQRHYLQQLRRSKQNKQD 558
           LA + L +   RH L+ + RS+++KQ+
Sbjct: 533 LADMILERDRARHELETMHRSQRDKQE 559


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 585 LVFSKGWRRFTS 620
           L+FS GWRRF S
Sbjct: 782 LIFSMGWRRFQS 793


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,818
Number of Sequences: 5004
Number of extensions: 56742
Number of successful extensions: 147
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)