Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29p14
(667 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0651 + 30644241-30644615,30644751-30644858 50 2e-06
06_01_1033 - 8080179-8080685 47 1e-05
07_01_0793 - 6169661-6169936,6170942-6171025,6171473-6171590,617... 40 0.002
02_04_0020 - 18956282-18956461,18956591-18956740,18957934-189580... 37 0.013
08_02_1015 - 23597445-23597628,23597654-23597877 29 2.5
03_01_0385 - 2988117-2988429,2988566-2988887,2988977-2989118 29 4.4
06_01_0197 - 1525945-1526622 28 5.8
01_03_0109 + 12630644-12630731,12630744-12630775,12631136-126312... 28 5.8
01_01_0621 + 4645583-4646902 28 7.7
>02_05_0651 + 30644241-30644615,30644751-30644858
Length = 160
Score = 49.6 bits (113), Expect = 2e-06
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Frame = +1
Query: 103 MVKEKPNSIRIYDDEGFRRRAACIC--VRSDAETEVLLVTSSRRPDNWIXXXXXXXXXXX 276
+V + ++ Y G R CI VRS E EVL++TS ++ +
Sbjct: 4 LVARQGRELQRYTSAGGRIVVGCIPYRVRSGGEMEVLVITS-QKGHGMMFPKGGWELDES 62
Query: 277 XXXTAMREVLEEAGVIGKLGRCLGVFENREHKHRTE----VYVMTVTQELPEWEDSRLMG 444
A RE LEEAGV G LG + + ++ T ++ + VT EL +W + +
Sbjct: 63 MDEAARREALEEAGVRGDTETSLGCWYYKSRRYDTTYEGFMFPLRVTDELLQWPE--MSS 120
Query: 445 RKRQWFSIDDAL 480
RKR W ++ A+
Sbjct: 121 RKRTWATVQQAM 132
>06_01_1033 - 8080179-8080685
Length = 168
Score = 47.2 bits (107), Expect = 1e-05
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Frame = +1
Query: 103 MVKEKPNSIRIYDDE-GFRRRAACIC--VRSDAE-TEVLLVTSSRRP----DNWIXXXXX 258
MV + ++ Y D G R CI VR D EVL+++S ++ D +
Sbjct: 5 MVARQGRELQRYSDNTGGRMVVGCIPYRVRGDGGGVEVLVISSQKKGAAAGDVVMFPKGG 64
Query: 259 XXXXXXXXXTAMREVLEEAGVIGKLGRCLG--VFENREHKHRTE--VYVMTVTQELPEWE 426
A RE LEEAGV+G++G LG + +R + E V+ + VT EL W
Sbjct: 65 WELDESVDEAARREALEEAGVLGEIGASLGRWCYRSRRYDATYEGFVFPLRVTDELDRWP 124
Query: 427 DSRLMGRKRQWFSIDDAL 480
+ + R+R W S A+
Sbjct: 125 E--MAARRRSWVSPQQAM 140
>07_01_0793 -
6169661-6169936,6170942-6171025,6171473-6171590,
6172917-6172987
Length = 182
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Frame = +1
Query: 289 AMREVLEEAGVIGKLGRCLGVFENREHKH----------RTEVYVMTVTQELPEWEDSRL 438
A RE +EEAGV G L + LG ++ + H R V+ + V +EL W +
Sbjct: 76 AAREAIEEAGVRGDLVQLLGFYDFKSKTHQDKFCPEGMCRAAVFALRVKEELASWPEQST 135
Query: 439 MGRKRQWFSIDDAL 480
RKR W ++ +A+
Sbjct: 136 --RKRTWLTLSEAV 147
>02_04_0020 -
18956282-18956461,18956591-18956740,18957934-18958017,
18958283-18958403,18958525-18958604
Length = 204
Score = 37.1 bits (82), Expect = 0.013
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Frame = +1
Query: 193 ETEVLLVTSSRRPDNWIXXXXXXXXXXXXXXTAMREVLEEAGVIGKLGRC-LG--VFENR 363
+ EVL+V++ R D + A RE +EEAGV G + R LG VF+++
Sbjct: 49 QVEVLMVSTPNRAD-MVFPKGGWEDDEEVYEAASREAMEEAGVKGIVNRTTLGHWVFKSK 107
Query: 364 EHKHRTE--------VYVMTVTQELPEWEDSRLMGRKRQWFSIDDA 477
++ + ++ M VT+EL W + GR+ W S +A
Sbjct: 108 SSQNSSSPRGACKGYIFAMEVTEELESWPEQATHGRR--WVSPGEA 151
>08_02_1015 - 23597445-23597628,23597654-23597877
Length = 135
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 458 GSPLMMPWLSSPFTSQSSVTTFNNCVV 538
G P MPW +P TSQ S T+ N ++
Sbjct: 54 GPPATMPWCPAPDTSQVSPNTWYNLIL 80
>03_01_0385 - 2988117-2988429,2988566-2988887,2988977-2989118
Length = 258
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 598 FENTNWEGY-T*SGHLACSVWNDAVVEGSDAGLACEGRAEP 479
+ N W GY T + L+ +++ND G +AC+ +AEP
Sbjct: 53 YGNLYWSGYGTNTAALSSALFNDGASCGQCYQIACDHQAEP 93
>06_01_0197 - 1525945-1526622
Length = 225
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 309 GSRSDRETRTMSWSIREPRTQTPNRGLCY 395
G R R R +S+S+R PRT P RG+ +
Sbjct: 136 GLRPPRALRRLSYSLRCPRTGGPARGVVH 164
>01_03_0109 +
12630644-12630731,12630744-12630775,12631136-12631217,
12631357-12631481,12631593-12631772,12632239-12632607
Length = 291
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = +2
Query: 407 KNYPSGRIQDSWDVRGNGSPLMMP-----WLSSPFTSQSSVTTFNN 529
K+Y R++D W +G P MP LS+P + S TT NN
Sbjct: 66 KDYTKSRVEDIWKKMNSGMPAKMPKPVMNKLSTPAKEKKS-TTGNN 110
>01_01_0621 + 4645583-4646902
Length = 439
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 422 GRIQDSWDVRGNGSPLMMPWLSSPFTSQS 508
G IQ W V G PLM W+ P+T Q+
Sbjct: 300 GLIQGQWVVGGGSFPLM-DWMLVPYTHQN 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,658,091
Number of Sequences: 37544
Number of extensions: 410120
Number of successful extensions: 1084
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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