Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29p14
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)                   79   4e-15
SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_2123| Best HMM Match : PKD_channel (HMM E-Value=0)                  29   3.4  
SB_48035| Best HMM Match : rve (HMM E-Value=0.00061)                   28   5.9  
SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)            28   7.9  
SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)
          Length = 169

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 9/120 (7%)
 Frame = +1

Query: 103 MVKEKPNSIRIYDDEGFRRRAACICVRSDAETEVLLVTSSRRPDNWIXXXXXXXXXXXXX 282
           M+K      R YD++G+ +RA C+C R++ E EVLLV+SS+ PD W+             
Sbjct: 48  MIKNSNKGSRTYDEDGYVKRAGCVCFRTELEKEVLLVSSSKHPDKWVVPAGGIEPGEEPK 107

Query: 283 XTAMREVLEEA-----GVIGKLGRCLG----VFENREHKHRTEVYVMTVTQELPEWEDSR 435
            TA+REV EE       ++    RCL            + +T V+V+TVT+EL  W+++R
Sbjct: 108 ETAIREVQEEVRKRKRSLLLLASRCLDNAAVSLPYDNSRSKTWVFVLTVTEELEVWDEAR 167


>SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 29/70 (41%), Positives = 41/70 (58%)
 Frame = +1

Query: 103 MVKEKPNSIRIYDDEGFRRRAACICVRSDAETEVLLVTSSRRPDNWIXXXXXXXXXXXXX 282
           M+K      R YD++G+ +RA C+C R++ E EVLLV+SS+ PD W+             
Sbjct: 83  MIKNSNKGSRTYDEDGYVKRAGCVCFRTELEKEVLLVSSSKHPDKWVVPAGGIEPGEEPK 142

Query: 283 XTAMREVLEE 312
            TA+REV EE
Sbjct: 143 ETAIREVQEE 152


>SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -3

Query: 185 ERTQIHAARRLKPSSSYILIELGFSFTIFVCKHVNTNETNDHKINTDIN*KEKL*N 18
           +RT     R ++ +   +++  GF   +  CK  N +E N+ K N   N ++K  N
Sbjct: 53  DRTSTEPERSVRNALKAMILVYGFLQVLSHCKKQNASENNESKTNKSTNERKKCGN 108


>SB_2123| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 672

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 439 MGRKRQWFSIDDALAQLALHKPIQRHYLQQLRRSKQNKQDDQTTYNLP 582
           M R RQ     D L Q+  H+P+  H   +     ++ ++D+T +N+P
Sbjct: 47  MPRLRQVRLKPDPLCQVESHEPMLAHMFHRCLPLYKHSKEDKTPWNMP 94


>SB_48035| Best HMM Match : rve (HMM E-Value=0.00061)
          Length = 206

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -1

Query: 490 RAEPGHHQWRT 458
           RAEPGHH WR+
Sbjct: 166 RAEPGHHSWRS 176


>SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 291 DAGGT*GSRSDRETRTMSWSIREPRTQTPNRGLCY 395
           D  G+ G+   R+ +   W I +PR +T +   CY
Sbjct: 40  DGFGSNGTLKRRQKKNNDWQITDPRWRTKSANKCY 74


>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
          Length = 627

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 442 GRKRQW-FSIDDALAQLALHKPIQRHYLQQLRRSKQNKQDDQTTYNLPS 585
           GR+ +W FS DD LAQ++     QR  +  L R  +    D     L S
Sbjct: 260 GRETEWLFSSDDGLAQISSDAGYQRLVVVSLNRGHKYTSMDHIKEELSS 308


>SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1301

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 286  TAMREVLEEAGVIGKLGRCLGVFENREHKH 375
            TA+RE+ EE GVIG+  R +   ENR   H
Sbjct: 1196 TALRELAEEGGVIGRAERYM---ENRHILH 1222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,335,642
Number of Sequences: 59808
Number of extensions: 466215
Number of successful extensions: 1453
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)