Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29p14
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084268-2|AAL16324.1|  150|Caenorhabditis elegans Hypothetical ...    87   8e-18
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    28   5.2  
Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U28943-5|AAA68359.2|  435|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AC084268-2|AAL16324.1|  150|Caenorhabditis elegans Hypothetical
           protein Y92H12BL.5 protein.
          Length = 150

 Score = 87.4 bits (207), Expect = 8e-18
 Identities = 43/124 (34%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
 Frame = +1

Query: 100 KMVKEKPNSIRIYDDEGFRRRAACICVRSDA-ETEVLLVTSSRRPDNWIXXXXXXXXXXX 276
           K  + + N +R+ D +GFR RAA +C++    ET VLLV+  +    W+           
Sbjct: 6   KSRESERNKVRLRDTDGFRIRAAALCIKGTGKETLVLLVSGGKDGGKWVVPGGGIEKDEC 65

Query: 277 XXXTAMREVLEEAGVIGKLGRCLGVFENREHKHRTEVYVMTVTQELPEWEDSRLMGRKRQ 456
               A RE++EEAGV   + + +G+F++   KHRT+V++M V++EL  WE++   GR+R 
Sbjct: 66  AEEAAHRELMEEAGVRATILKKIGMFQDDVRKHRTQVFLMEVSEELQTWEENE-YGRQRI 124

Query: 457 WFSI 468
           W ++
Sbjct: 125 WMNV 128


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 455  NGSPLMMP-WLSSPFTSQSSVTTFN-NCVVPNRTSKMTRLRITFPVSVFKRLEE 610
            +G P  +P W+ + +TSQSS + F+ +   P   +K T ++ T   S   ++ E
Sbjct: 1288 SGKPATIPDWIMAMYTSQSSSSKFSKSTAFPTLITKQTEIKPTTVSSFAPKVPE 1341


>Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical
           protein K03D7.6 protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 437 SWDVRGNGSPLMMPWLSSPFTSQSSVTTF---NNCVVPNRTSKMTRLR 571
           SW    NG  L++ WLS  F + S V  F   N+ +V N+  +MT+ R
Sbjct: 102 SWFEVPNGVQLLIVWLSMTFAAASYVYVFESRNSTLVQNK-FRMTQRR 148


>U28943-5|AAA68359.2|  435|Caenorhabditis elegans Hypothetical
           protein E04F6.6 protein.
          Length = 435

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
 Frame = +1

Query: 361 REHKHRTEVYVMTVTQELPEWEDSRLMGRKRQWFSID-------DALAQLALHKPIQRHY 519
           R H+HR   Y     +++ +W   R    K +  + D       D + Q A++  + R Y
Sbjct: 61  RRHRHRRPSYDDAYERQMEQWRQQRKEANKARQAASDQYYQDYFDRMKQYAINTHVSR-Y 119

Query: 520 LQQLRRSKQNKQ 555
            Q L + ++ KQ
Sbjct: 120 NQLLAQQEKEKQ 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,412,565
Number of Sequences: 27780
Number of extensions: 334196
Number of successful extensions: 811
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)