Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29p14
(667 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 26 0.28
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 25 0.86
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 25 0.86
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 23 2.0
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 23 2.0
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 23 2.6
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 23 3.5
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 23 3.5
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 22 4.6
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 22 6.0
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 8.0
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 26.2 bits (55), Expect = 0.28
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 452 GNGSPLMMPWLSSPFTSQSSVTTFNNCVVPNRTSKM 559
G P + P ++ SQS++ T V P+RTS M
Sbjct: 389 GGSFPSLYPMATTSPQSQSTIQTLRPQVSPDRTSPM 424
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.6 bits (51), Expect = 0.86
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 166 ACICVRSDAETEVLLVTSSRRPDNW 240
+CICVR AE +L S++ ++W
Sbjct: 487 SCICVRFIAEHTKMLEDSTKVKEDW 511
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.6 bits (51), Expect = 0.86
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 166 ACICVRSDAETEVLLVTSSRRPDNW 240
+CICVR AE +L S++ ++W
Sbjct: 487 SCICVRFIAEHTKMLEDSTKVKEDW 511
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 23.4 bits (48), Expect = 2.0
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 581 GRLYVVWSSCLFCL 540
G L VVW C FC+
Sbjct: 211 GTLAVVWIMCYFCI 224
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 23.4 bits (48), Expect = 2.0
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 581 GRLYVVWSSCLFCL 540
G L VVW C FC+
Sbjct: 264 GTLAVVWIMCYFCI 277
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 23.0 bits (47), Expect = 2.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 503 QSSVTTFNNCVVPNRTSKMTRLRITFPVSVFKRL 604
+SS+ N V R ++ L + FP + KRL
Sbjct: 443 KSSIEEANLAVSAEREKNVSLLHLIFPPDIAKRL 476
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 22.6 bits (46), Expect = 3.5
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 102 NGKGEA*FDKDI*RRGF*ATGGMYLRAFRCRNRGPAGDVFETAR 233
NG+ EA + K + + LRA+ C G GD+ T +
Sbjct: 46 NGEEEAYYRKHLLKDADGRVSCPVLRAYTCPICGACGDIAHTVK 89
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 22.6 bits (46), Expect = 3.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1
Query: 616 VNLLQPFENTNW 581
V+ LQPF NT W
Sbjct: 558 VSFLQPFSNTLW 569
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 22.2 bits (45), Expect = 4.6
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -3
Query: 581 GRLYVVWSSCLFCL 540
G L +VW C FC+
Sbjct: 178 GTLLLVWILCYFCI 191
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +2
Query: 551 SKMTRLRITFPVSVFKRLEEIHL 619
+++TRL+ P+ ++L+E+HL
Sbjct: 222 NEITRLQENSPLLDLRQLQELHL 244
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.4 bits (43), Expect = 8.0
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 494 FTSQSSVTTFNNCVVPNRTSKMTRLRITFPVSVFKRLEEIHLPV 625
FT QSSVTT V P + L ++ ++E+ P+
Sbjct: 266 FTIQSSVTTSKMMVSPRLYDRQNGLVLSRMNLTLAKMEKTSKPL 309
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,167
Number of Sequences: 438
Number of extensions: 4455
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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