Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29p11
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...   133   2e-32
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    27   2.3  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   3.1  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   7.1  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   7.1  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   7.1  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    25   9.4  

>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score =  133 bits (322), Expect = 2e-32
 Identities = 59/106 (55%), Positives = 81/106 (76%)
 Frame = +2

Query: 260 SQPAWSPPVRNKERPVLKLYNSLSRQKEEFIPANGNRVNWYSCGPTVYDASHMGHARSYM 439
           +Q  W  P    +R  L +YN+L+  K  F+ +NG+ + WY CGPTVYDASHMGHAR+Y+
Sbjct: 7   AQSHWGVP--KGQRTELYVYNTLTHSKVPFV-SNGSNLTWYCCGPTVYDASHMGHARNYV 63

Query: 440 SFDILRRVMANYFGYDILYVMNITDIDDKIIKRARQKYLYEKYLKR 577
           + DILRR++ +YFGY+I +V N+TDIDDKII RARQ+YL+E+Y K+
Sbjct: 64  TTDILRRILQSYFGYNITFVQNVTDIDDKIILRARQQYLFEEYKKQ 109


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 434 YMSFDILRRVMANY--FGYDILYVMNITDIDDKIIKRARQKYLYEKYLKRTTK 586
           Y   D  R V+A +   G D+L  +N  D DD   K++  +++Y+ Y+ + +K
Sbjct: 23  YEEHDCERTVLAFFCLLGLDLLNALNTIDDDD---KKSWIEWIYKNYVTKESK 72


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 332 RQKEEFIPANGNRVNWYSCGPTVYDAS-HMGHARSYMSF 445
           R++E+F+ +N     WY C     D   ++ H   YM+F
Sbjct: 232 REEEKFLTSNDLPPLWYHCKSLFDDRMVYVNHVYGYMTF 270


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 407 ASHMGHARSYMSFDILRRVMANYFGYDI 490
           A   GH      F +  R+MA+ FG+D+
Sbjct: 600 AIETGHVNPRDDFKVRARIMADEFGWDV 627


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 407 ASHMGHARSYMSFDILRRVMANYFGYDI 490
           A   GH      F +  R+MA+ FG+D+
Sbjct: 600 AIETGHVNPRDDFKVRARIMADEFGWDV 627


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 239 QLKMSKRSQPAWSPPVRNKERPVLKLYNSLSRQKEEFIPANGNRV 373
           +L+  + +Q      + NKER  LKL N  ++  E+ I  N N V
Sbjct: 150 KLREKEEAQRLRQEQILNKERQQLKLNNFFTKGVEKRIAPNENFV 194


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 248 MSKRSQPAWSPPVRNKERPVLKLY 319
           +SKR++P+  PP+R+   P L ++
Sbjct: 58  VSKRARPSQKPPLRSTHLPHLLIF 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,432,480
Number of Sequences: 5004
Number of extensions: 46510
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)