Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29p11
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0304 - 2378657-2378704,2378790-2378795,2378860-2379039,237...    97   8e-21
09_06_0243 - 21813223-21813456,21814266-21814367,21814501-218147...    88   5e-18
10_08_0290 + 16549048-16549262,16549770-16549833,16550106-165502...    85   5e-17
09_04_0150 - 15150169-15150228,15150294-15150529,15151844-151520...    28   5.6  
05_01_0170 + 1180168-1180367,1181538-1181598,1181657-1181659,118...    28   5.6  
01_06_0909 - 32903520-32903828,32903899-32903973,32904068-329042...    28   5.6  

>03_01_0304 -
           2378657-2378704,2378790-2378795,2378860-2379039,
           2379145-2379327,2379549-2379632,2379748-2379873,
           2379964-2380245,2380326-2380496,2380828-2380989,
           2381501-2381564,2382040-2382221
          Length = 495

 Score = 97.5 bits (232), Expect = 8e-21
 Identities = 44/85 (51%), Positives = 61/85 (71%)
 Frame = +2

Query: 293 KERPVLKLYNSLSRQKEEFIPANGNRVNWYSCGPTVYDASHMGHARSYMSFDILRRVMAN 472
           K  P L+L+NS++++KE F P    +V  Y CG T YD SH+GHAR+Y++FD+L R +  
Sbjct: 6   KPTPQLELFNSMTKKKELFEPLVEGKVRMYVCGVTPYDFSHIGHARAYVAFDVLYRYL-K 64

Query: 473 YFGYDILYVMNITDIDDKIIKRARQ 547
           + GY++ YV N TDIDDKIIKRA +
Sbjct: 65  FLGYEVEYVRNFTDIDDKIIKRANE 89


>09_06_0243 -
           21813223-21813456,21814266-21814367,21814501-21814701,
           21815591-21815716,21815791-21816072,21816218-21816388,
           21816838-21816999,21817404-21817467,21818136-21818503
          Length = 569

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 44/81 (54%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
 Frame = +2

Query: 308 LKLYNSLSRQKEEFIP-ANGNRVNWYSCGPTVYDASHMGHARSYMSFDILRRVMANYFGY 484
           L LYN+ SR+KE F P   G  V  Y CG T YD SH+GHAR+Y++FD+L R +  Y  +
Sbjct: 72  LHLYNTKSRRKELFQPRVPGGEVGMYVCGVTPYDDSHIGHARAYVAFDVLYRYL-RYLDH 130

Query: 485 DILYVMNITDIDDKIIKRARQ 547
            + YV N TDIDDKII RA Q
Sbjct: 131 KVRYVRNFTDIDDKIIARANQ 151


>10_08_0290 +
           16549048-16549262,16549770-16549833,16550106-16550267,
           16550786-16550956,16551041-16551235,16551421-16551546,
           16551648-16551809,16551953-16552120,16552223-16552435
          Length = 491

 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 39/80 (48%), Positives = 55/80 (68%)
 Frame = +2

Query: 308 LKLYNSLSRQKEEFIPANGNRVNWYSCGPTVYDASHMGHARSYMSFDILRRVMANYFGYD 487
           L+L+++ ++    F P    +V  Y CG T YD SH+GHAR+Y++FD+L R +  Y GY+
Sbjct: 22  LRLFDTRTKAAVPFRPRVEGKVAMYVCGVTPYDYSHVGHARAYVAFDVLFRYL-KYLGYE 80

Query: 488 ILYVMNITDIDDKIIKRARQ 547
           + YV N TDIDDKIIKRA +
Sbjct: 81  VNYVRNFTDIDDKIIKRANE 100


>09_04_0150 -
           15150169-15150228,15150294-15150529,15151844-15152063,
           15152218-15152385,15152969-15153214
          Length = 309

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 356 RV*ILLFVGSNYCKVLKLVAPCFEPEVTKQV 264
           R+  LL    NYCK    + P F P+VT+ +
Sbjct: 179 RIGNLLVPNDNYCKFENWIMPIFLPDVTRAI 209


>05_01_0170 +
           1180168-1180367,1181538-1181598,1181657-1181659,
           1182396-1182443,1182979-1184595
          Length = 642

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 617 LTASSXGVVKVSWFFLNIFHINIFVW 540
           L ASS  +  + +F  ++FH+++F+W
Sbjct: 39  LLASSFCIASLLFFLHSLFHVSLFIW 64


>01_06_0909 -
           32903520-32903828,32903899-32903973,32904068-32904235,
           32904508-32904565,32904638-32904879,32905145-32905216,
           32905865-32905943,32906734-32907062,32907137-32907256,
           32907355-32907429,32908260-32908342,32908942-32908984,
           32909271-32909429,32910203-32910281,32910685-32910755,
           32910847-32910946,32911023-32911229,32911348-32911442,
           32912362-32912436,32912621-32912713,32913078-32913182,
           32913851-32913921,32914943-32915096,32916035-32916098,
           32916717-32916800,32917543-32917589,32918352-32918411,
           32918521-32918592
          Length = 1062

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +2

Query: 341 EEFIPANGNRVNWYSCGPTVYDASHMGHARSYMSFDILRRVMANYFGYDILYVMNITDID 520
           EEF+P  G  V  Y+ GP         HA +  S  +   VM N  G ++ Y + +T  +
Sbjct: 208 EEFMPTGGTDVKVYTVGP------GYAHAEARKSPVVDGVVMRNSDGKEVRYPVLLTPTE 261

Query: 521 DKIIKRARQKY 553
            +I +   Q +
Sbjct: 262 KQIARNICQAF 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,510,570
Number of Sequences: 37544
Number of extensions: 260929
Number of successful extensions: 539
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)