Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29p11
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 156 1e-38
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 156 1e-38
AF077541-10|AAM54170.2| 179|Caenorhabditis elegans Cysteinyl tr... 114 4e-26
AF038623-6|AAB94154.1| 388|Caenorhabditis elegans Hypothetical ... 31 0.93
Z75545-2|CAA99885.1| 327|Caenorhabditis elegans Hypothetical pr... 29 3.8
U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical p... 27 8.7
U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical p... 27 8.7
U50308-5|AAG24033.2| 284|Caenorhabditis elegans Seven tm recept... 27 8.7
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 156 bits (378), Expect = 1e-38
Identities = 68/112 (60%), Positives = 81/112 (72%)
Frame = +2
Query: 254 KRSQPAWSPPVRNKERPVLKLYNSLSRQKEEFIPANGNRVNWYSCGPTVYDASHMGHARS 433
KR Q W P P L +YNSL+RQKE F+P G RV WY CGPTVYD+SHMGHARS
Sbjct: 166 KRVQKHWDQPKNATPPPQLTVYNSLTRQKEVFVPNEGKRVRWYICGPTVYDSSHMGHARS 225
Query: 434 YMSFDILRRVMANYFGYDILYVMNITDIDDKIIKRARQKYLYEKYLKRTTKP 589
Y+S DILRRV +YFGYD+ ++MNITD+DDKIIKRARQ +L + Y + P
Sbjct: 226 YLSLDILRRVFRDYFGYDVEFIMNITDVDDKIIKRARQSHLLKSYFNESQAP 277
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 156 bits (378), Expect = 1e-38
Identities = 68/112 (60%), Positives = 81/112 (72%)
Frame = +2
Query: 254 KRSQPAWSPPVRNKERPVLKLYNSLSRQKEEFIPANGNRVNWYSCGPTVYDASHMGHARS 433
KR Q W P P L +YNSL+RQKE F+P G RV WY CGPTVYD+SHMGHARS
Sbjct: 165 KRVQKHWDQPKNATPPPQLTVYNSLTRQKEVFVPNEGKRVRWYICGPTVYDSSHMGHARS 224
Query: 434 YMSFDILRRVMANYFGYDILYVMNITDIDDKIIKRARQKYLYEKYLKRTTKP 589
Y+S DILRRV +YFGYD+ ++MNITD+DDKIIKRARQ +L + Y + P
Sbjct: 225 YLSLDILRRVFRDYFGYDVEFIMNITDVDDKIIKRARQSHLLKSYFNESQAP 276
>AF077541-10|AAM54170.2| 179|Caenorhabditis elegans Cysteinyl trna
synthetase protein2, isoform a protein.
Length = 179
Score = 114 bits (275), Expect = 4e-26
Identities = 51/91 (56%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
Frame = +2
Query: 371 VNWYSCGPTVYDASHMGHARSYMSFDILRRVMANYFGYDILYVMNITDIDDKIIKRARQK 550
V WY CGPTV D+SHMGHARSY+S DILRRV +YFGYD+ ++MNITD+DDKIIKRARQ
Sbjct: 53 VGWYICGPTVNDSSHMGHARSYLSLDILRRVFRDYFGYDVEFIMNITDVDDKIIKRARQS 112
Query: 551 YLYEKYLKRTTK-P*RHRLMMQSTL*ITMRK 640
+L + Y + H ++Q+T + + K
Sbjct: 113 HLLKSYFNESLHLNSTHSKLLQTTFIVYLHK 143
>AF038623-6|AAB94154.1| 388|Caenorhabditis elegans Hypothetical
protein T08B6.2 protein.
Length = 388
Score = 30.7 bits (66), Expect = 0.93
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = +2
Query: 308 LKLYNSLSRQKEEFIPANG-----NRVNWYSCGPTVYDASHMGHARSYMSF-DILRRVMA 469
L YN+ SR F+ +NG NR W+ P +Y +M SY++F DI RV +
Sbjct: 317 LSWYNAKSRSSNHFLISNGQKYEINREEWFDLDPVIY---NMTLNYSYLTFQDIQIRVYS 373
Query: 470 N 472
+
Sbjct: 374 S 374
>Z75545-2|CAA99885.1| 327|Caenorhabditis elegans Hypothetical
protein K10D3.3 protein.
Length = 327
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 242 LKMSKRSQ--PAWSPPVRNKERPVLKLYNSLSRQKEEFIPANGNRVNWY 382
LKMS + +P V KE P++K+ ++S ++ F+P +V +Y
Sbjct: 80 LKMSDKEDILVETAPSVEKKEEPIVKMEETISITQQSFLPQIKPQVVFY 128
>U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical
protein F46F11.1b protein.
Length = 1225
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +2
Query: 341 EEFIPANGNRVNWYSCGPTVYDASHMGHARSYMSFDILRRVMANYFGYDILYVMNITDID 520
EEFIPA+G V Y+ GP HA + + + +V + G ++ Y + +++ +
Sbjct: 212 EEFIPADGTDVKVYAVGP------FYAHAEARKAPGLDGKVERDSDGKEVRYPVILSNKE 265
Query: 521 DKIIKR 538
+I K+
Sbjct: 266 KQIAKK 271
>U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical
protein F46F11.1a protein.
Length = 1339
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +2
Query: 341 EEFIPANGNRVNWYSCGPTVYDASHMGHARSYMSFDILRRVMANYFGYDILYVMNITDID 520
EEFIPA+G V Y+ GP HA + + + +V + G ++ Y + +++ +
Sbjct: 212 EEFIPADGTDVKVYAVGP------FYAHAEARKAPGLDGKVERDSDGKEVRYPVILSNKE 265
Query: 521 DKIIKR 538
+I K+
Sbjct: 266 KQIAKK 271
>U50308-5|AAG24033.2| 284|Caenorhabditis elegans Seven tm receptor
protein 94 protein.
Length = 284
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 461 VMANYFGYDILYVMNITDIDDKIIKRARQKYLYEKYL 571
V A Y G+ + ++ N+T I II R RQ + KYL
Sbjct: 8 VSAEYLGFFVAFITNVTLI-YLIITRTRQNFGSYKYL 43
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,332
Number of Sequences: 27780
Number of extensions: 259169
Number of successful extensions: 436
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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