Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29p06
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0853 - 21076085-21076138,21076188-21076333,21076540-210766...    29   3.4  
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190...    28   5.9  

>10_08_0853 -
           21076085-21076138,21076188-21076333,21076540-21076645,
           21076739-21076816,21076923-21076979,21077070-21077130,
           21077360-21077412,21077613-21077699,21077820-21077899,
           21079469-21079681,21079824-21080064
          Length = 391

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 111 LSMKCVLKVRFDVKCMFIQTILVYSFA*PLLLFNYYSKTRLCYRHHKIVRPNFDPK 278
           L+  C+    +  +C F Q IL Y      +L + Y   +    HH  V P+ DPK
Sbjct: 251 LNKDCLSSTDYPYQCFFPQYILPYIRTPYFILNSAYDVYQF---HHNFVHPSCDPK 303


>05_01_0251 +
           1901709-1901864,1901968-1901999,1902534-1902664,
           1902740-1902821,1902928-1903054,1903369-1903686,
           1903785-1903846,1903988-1904074,1904139-1904195,
           1906113-1906197,1906916-1907185,1908158-1908254,
           1908390-1908436,1908826-1908939,1909024-1909117,
           1909360-1909457,1910356-1910455,1911445-1911521,
           1911824-1913122
          Length = 1110

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 384 LCK*IYFIINIVVLSFLILFRVFLTWTLYVHTK 286
           LC  +Y++   ++L FLILFR+ L    Y +TK
Sbjct: 399 LCS-LYYLALSIILCFLILFRLSLYAGFYWYTK 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,164,254
Number of Sequences: 37544
Number of extensions: 254389
Number of successful extensions: 425
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)