Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29p05
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    75   7e-15
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    72   4e-14
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   0.60 
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   2.4  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   3.2  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   5.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   9.8  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 74.5 bits (175), Expect = 7e-15
 Identities = 32/49 (65%), Positives = 40/49 (81%)
 Frame = +3

Query: 3   SIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 149
           SIGL+W+LLAREVLR+RG L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 172 SIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 72.1 bits (169), Expect = 4e-14
 Identities = 31/47 (65%), Positives = 39/47 (82%)
 Frame = +3

Query: 3   SIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 143
           SIGL W+LLAREVLRLRG + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 173 SIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -3

Query: 100 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 2
           N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 6   IGLMWWLLAREVLRLRGVLPRDQRWD 83
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 61  FPVTSAGML--WLICSSTVTLKKVKRM 135
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 103 KNKSTTTSQRWSRGSTPRSLSTSRANNHHI 14
           K+K   ++Q W   +TPRS S    N ++I
Sbjct: 414 KSKHAGSTQEWHSHTTPRSTSKHENNLNNI 443


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 104  EEQINHNIPALVTGKHTTKPQHFTCQQP 21
            E+ +   IPA  TG  T +  +FT  QP
Sbjct: 1004 EKSVQAPIPAQPTGNITIQNAYFTAPQP 1031


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,592,260
Number of Sequences: 5004
Number of extensions: 24025
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)