Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29p05
(462 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 70 8e-13
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 67 6e-12
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 1.4
06_03_0543 + 21967787-21970261 29 2.4
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 3.2
04_04_1331 - 32706043-32707248,32707411-32707652,32707737-327085... 27 7.3
12_02_1057 + 25733376-25735439 27 9.7
08_02_0644 - 19658270-19658626,19659142-19659218,19659256-196594... 27 9.7
04_03_0663 - 18487295-18487795 27 9.7
03_02_0039 - 5213699-5214775,5214815-5215093,5215300-5215776,521... 27 9.7
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 27 9.7
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 70.1 bits (164), Expect = 8e-13
Identities = 29/51 (56%), Positives = 41/51 (80%)
Frame = +3
Query: 3 SIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 155
SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 174 SIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 67.3 bits (157), Expect = 6e-12
Identities = 27/47 (57%), Positives = 39/47 (82%)
Frame = +3
Query: 3 SIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 143
SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 174 SIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 263 TRCSSCFWSTPCSRRMVCPGTR*VEHN 343
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 263 TRCSSCFWSTPCSRRMVCPGTR 328
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 12 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 101
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 263 TRCSSCFWSTPCSRRMVCPGTR*VEHN 343
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>04_04_1331 -
32706043-32707248,32707411-32707652,32707737-32708562,
32708640-32708863,32708946-32709262,32709381-32709443,
32709465-32709640,32710609-32710985,32711416-32711470,
32711614-32711913
Length = 1261
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 87 VVDLFFYRDPEESEK 131
++D+F+YRDP E EK
Sbjct: 721 MLDVFYYRDPNEMEK 735
>12_02_1057 + 25733376-25735439
Length = 687
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +2
Query: 263 TRCSSCFWSTPCSRRMVCPGTR*VEHN 343
T+C C P VCPG+R + N
Sbjct: 93 TQCQECLAGAPAGIVQVCPGSRTADAN 119
>08_02_0644 -
19658270-19658626,19659142-19659218,19659256-19659430,
19659543-19659596,19659691-19659858,19660756-19660953,
19661546-19661632,19661739-19661827,19662499-19662955
Length = 553
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 22 GCWHVKC*GFVVCFPVTSAGMLWLICSSTVTLKKV 126
GC ++ C GFV+ TS GM+ S + + KV
Sbjct: 359 GCMNMLCPGFVLLSRTTSPGMVLTTGSIPLNMTKV 393
>04_03_0663 - 18487295-18487795
Length = 166
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 333 THLVPGQTILLEQGVLQKQELQRVQQAG 250
T + P QT + +Q QKQ QR+Q+ G
Sbjct: 63 TQIKPNQTKIKQQEENQKQSSQRIQKLG 90
>03_02_0039 -
5213699-5214775,5214815-5215093,5215300-5215776,
5216073-5216438
Length = 732
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 103 KNKSTTTSQRWSRGSTPR 50
+ KSTTT +RW R + PR
Sbjct: 122 RKKSTTTPRRWWRSTIPR 139
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 113 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPH 15
V + Q NIP LVT TTK + F PPH
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPH 491
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,740,480
Number of Sequences: 37544
Number of extensions: 164087
Number of successful extensions: 497
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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