Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29p03
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0125 + 26046448-26046654,26046754-26047149,26047557-26047763     31   0.68 
07_01_1116 + 10308029-10308111,10308575-10308737,10308996-103090...    29   2.7  
09_04_0290 - 16429495-16429559,16430040-16430316,16430410-164305...    28   4.8  
04_04_0657 + 27000894-27001094,27001188-27001544,27002387-27002581     28   4.8  
11_04_0203 - 14828009-14828110,14828171-14828269,14828375-148284...    28   6.3  

>02_05_0125 + 26046448-26046654,26046754-26047149,26047557-26047763
          Length = 269

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 474 AHEVQNRLCARPSSRSCDSCSHRQHIACYMAGRKR 578
           A E  +  C    +  CD+C HR H A  +AG+ R
Sbjct: 9   AAEAASVFCCADEAALCDACDHRVHRANKLAGKHR 43


>07_01_1116 +
           10308029-10308111,10308575-10308737,10308996-10309062,
           10309120-10309375,10309658-10309781,10310039-10310077
          Length = 243

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +3

Query: 342 LIRELSGTPCGSNVQCRNECGDKVAARLMRDFWNILKEDPSCNLAHEVQNRLCARPSSRS 521
           ++++L G+    +++ +  C D V+ + + D+  +  +D    +  E +  +C    ++ 
Sbjct: 118 ILQQLEGSLIERDLKGKGRCKDIVSRKRLEDWRKLCNKD----VEREDECGICMETCTKM 173

Query: 522 C-DSCSHRQHIACYMAGRKRDE 584
              +CSH   I CY    +R E
Sbjct: 174 VLPNCSHAMCIKCYRDWYRRSE 195


>09_04_0290 -
           16429495-16429559,16430040-16430316,16430410-16430571,
           16431308-16431926,16431976-16432172
          Length = 439

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
 Frame = +3

Query: 357 SGTPCGSNVQCRNECGDKVAARLMRDFWNILKED--PSCNLAHEVQNRLCARPSSRSCDS 530
           S   C   V+  +   DK+  R   D+  +L      S +LA  + N L    S  SCD 
Sbjct: 78  SSAACPGRVRSFSAYVDKLTTRRAHDWILVLARRGVESLDLASPIHNHLAVHSSVFSCDR 137

Query: 531 CSHRQHIAC 557
            ++    AC
Sbjct: 138 LAYLNLFAC 146


>04_04_0657 + 27000894-27001094,27001188-27001544,27002387-27002581
          Length = 250

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 474 AHEVQNRLCARPSSRSCDSCSHRQHIACYMAGRKR 578
           A E  +  C    +  CD+C  R H A  +AG+ R
Sbjct: 9   AAEAASVFCCADEAALCDACDRRVHSANKLAGKHR 43


>11_04_0203 -
           14828009-14828110,14828171-14828269,14828375-14828461,
           14828733-14829111,14829214-14829377,14829544-14829636,
           14829843-14829989,14830065-14830166,14830392-14830490,
           14830669-14830803,14830928-14831006,14831111-14831186,
           14831281-14831370,14831723-14831798,14831880-14831914,
           14832303-14832377,14832468-14832840
          Length = 736

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +3

Query: 414 AARLMRDFWNILKEDPSCNLAHE----VQNRLCARPSSRSCDSCSHR 542
           A R+ R FW+  + D   + A      VQNR+C  P     ++ SH+
Sbjct: 99  ARRISRSFWSAGEYDADTSGAARPPGNVQNRMCVHPKFLHSNATSHK 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,383,160
Number of Sequences: 37544
Number of extensions: 305337
Number of successful extensions: 774
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)