Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29p03
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.9  
AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly pro...    23   2.9  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   3.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   3.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   3.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   3.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.9  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 342 VCLGLSCDDAGSPA 301
           VCLG++C D  S A
Sbjct: 9   VCLGIACQDVTSAA 22



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 573 YDPPYNKLCVADAS 532
           YDP Y KL VA  S
Sbjct: 236 YDPRYTKLTVAGES 249


>AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly
           protein MRJP3 protein.
          Length = 31

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 342 VCLGLSCDDAGSPA 301
           VCLG++C D  S A
Sbjct: 9   VCLGIACQDVTSAA 22


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 100 NNFNAILFYKNF 65
           NN+N  L+YKN+
Sbjct: 98  NNYNKKLYYKNY 109


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 100 NNFNAILFYKNF 65
           NN+N  L+YKN+
Sbjct: 109 NNYNKKLYYKNY 120


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 100 NNFNAILFYKNF 65
           NN+N  L+YKN+
Sbjct: 339 NNYNKKLYYKNY 350


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 100 NNFNAILFYKNF 65
           NN+N  L+YKN+
Sbjct: 334 NNYNKKLYYKNY 345


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/57 (19%), Positives = 22/57 (38%)
 Frame = +3

Query: 273 HCSLKKMNQMPDCLHRRKKALDRLIRELSGTPCGSNVQCRNECGDKVAARLMRDFWN 443
           HC+++      D   R  ++     RE++ + C  +     +     +   M D WN
Sbjct: 309 HCNMENTEGADDASERNPRSAVLAAREITSSSC--SYMAHEKLSYAFSVWRMEDDWN 363


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 576 VYDPPYNKLCVADAS 532
           VYDP Y K  + D S
Sbjct: 229 VYDPRYTKYTINDES 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,520
Number of Sequences: 438
Number of extensions: 3250
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)