Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29p02
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0299 - 2322204-2322734,2324089-2326164 36 0.033
04_04_1257 - 32155935-32156526,32156655-32157067 31 1.2
12_02_0046 + 12830974-12832386 30 2.2
01_01_0224 - 1905978-1907084,1907489-1908070,1908653-1908667 29 3.8
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962... 29 5.0
07_01_0234 + 1715338-1718233,1718351-1718760 28 6.6
04_03_1017 + 21747044-21748051 28 6.6
06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338 28 8.7
05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,675... 28 8.7
03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956 28 8.7
03_02_0458 + 8643804-8643904,8643994-8644091,8644206-8644504,864... 28 8.7
>05_01_0299 - 2322204-2322734,2324089-2326164
Length = 868
Score = 35.9 bits (79), Expect = 0.033
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 220 TPEPPNSFN--DASNISLPTNNNVPS--VSLSRSIQTRIASDSPNTSTTKTRINQPQSLF 387
TP PPNS+N A + + P N NVPS S+S Q+ I + P ++ + + F
Sbjct: 282 TPVPPNSYNTAKADSSATPANLNVPSSKPSVSGKAQSEIPNLKPKENSNPVPDHSEEQPF 341
Query: 388 IQALTKLNED 417
+ A T+ +D
Sbjct: 342 VAAATQPVKD 351
>04_04_1257 - 32155935-32156526,32156655-32157067
Length = 334
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Frame = +1
Query: 100 KDLNVSTQFGSNCEQVENRIGEDNEMASSREIVSHDLNSST--PEPPNSFNDASNISLPT 273
KD +S E + ++ SS + ++++ P PPNS + SN T
Sbjct: 217 KDCQLSVLLTKTAEIQRTTLRLSRQLVSSNSNIDDIIHNTNAPPAPPNSAINHSNNIFST 276
Query: 274 NNNVPSVSLSRSIQTRIASDSPNTSTTKTRINQPQ 378
N+++ R + + SP + + + NQPQ
Sbjct: 277 NHSLHRQPQQRVVVDGRSCVSPRPTPGQAKGNQPQ 311
>12_02_0046 + 12830974-12832386
Length = 470
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/65 (30%), Positives = 25/65 (38%)
Frame = +1
Query: 523 SAPPSYSFVLRQIAARPRTRFMGTFIPSPSFIQHTPPPNYASAFDVYVDNPMPRPSRIYN 702
SAPP + A P R M P P TPP +A D + P P P I +
Sbjct: 308 SAPPPWCVPPPPRPAPPSRRVMAPLPPYPMDPFETPPSPHAPRHDPFEPPPSPDPP-IQS 366
Query: 703 FGFSP 717
+ P
Sbjct: 367 YAIDP 371
>01_01_0224 - 1905978-1907084,1907489-1908070,1908653-1908667
Length = 567
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 625 TPPPNYASAFDVYVDNPMPRPSRIY 699
TPPP+ SA + D P PRPS Y
Sbjct: 47 TPPPHPLSATEDDADEPRPRPSGRY 71
>06_03_0138 +
17093196-17093325,17095704-17095804,17096224-17096292,
17096403-17097650,17097763-17097871,17099459-17099655,
17099732-17099842,17099927-17100079
Length = 705
Score = 28.7 bits (61), Expect = 5.0
Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 18/170 (10%)
Frame = +1
Query: 259 ISLPTNNNVPSVSLSRSIQTRIASDSPNTSTTKTRINQPQSLFIQALTKLNEDSVKFTVI 438
+SLP ++ VPS S ++ + + + P++ I + + +T + + T+
Sbjct: 356 VSLPLDSTVPSASSNKPMNIPVPTYLPSSQPPLANIAASAATVAEPVTLVTPGQLLPTIS 415
Query: 439 NIIKTQQ--EMAKMALNDDQHTLSAPDSLMSAPPSYSFVLRQIAARPRTRFMGTFIPSPS 612
+ + + E A + + S S +A + S V + + +F + +PS
Sbjct: 416 STVLSADALETASAMIPSPKAASSMVSSSQAALAASSQVTSSVVSPSEDQFASSPVPSHQ 475
Query: 613 FIQ------HTPPPNY-ASAFDVYVDN-----PMPRP----SRIYNFGFS 714
++ HT P + A V N P P+P S +FGFS
Sbjct: 476 QLEQNNEDRHTKKPEWKAKQHSVAPSNKEPLLPAPKPTLQKSHFQSFGFS 525
>07_01_0234 + 1715338-1718233,1718351-1718760
Length = 1101
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/59 (37%), Positives = 28/59 (47%)
Frame = +1
Query: 196 VSHDLNSSTPEPPNSFNDASNISLPTNNNVPSVSLSRSIQTRIASDSPNTSTTKTRINQ 372
+ +DL+ + PE N FN N L T N + SLS SI I S PN +NQ
Sbjct: 171 IKNDLSGNIPE--NIFN---NTPLLTYINFGNNSLSGSIPDGIGSSLPNLEYLCLHVNQ 224
>04_03_1017 + 21747044-21748051
Length = 335
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 172 EMASSREIVSHDLNSSTPEPPNSFNDASNISLPTNNNVPSVSLSRSI 312
+M R S D STP PP + + S P ++ +PS + S ++
Sbjct: 251 QMTPPRRAASPDYTPSTPPPPRAASPDYTPSTPPSSPLPSAAESFTV 297
>06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338
Length = 740
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 265 LPTNNNVPSVSLSRSIQTRIASDSPNTSTTKTRI-NQPQSLFI 390
LPT+N VP + + +QT ++ +T+T+ I + QSL +
Sbjct: 164 LPTSNGVPPTTRNVGVQTDTSNGGADTNTSNADILEKAQSLVV 206
>05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,
6759967-6760077,6760562-6760663,6761139-6761366,
6761568-6761696,6761753-6761869,6761955-6762301,
6762377-6762931,6763104-6763182,6763429-6763595,
6763857-6764075,6764956-6765139,6765175-6765371,
6765717-6766035,6766379-6766538,6767642-6767794,
6767911-6768013
Length = 1226
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 124 FGSNCEQVEN---RIGEDNEMASSREIVSHDLNSS 219
F +N ++ E IG+D+E SS++ + H LNSS
Sbjct: 1126 FAANTQEHEEPLKNIGQDDETISSKDNLHHGLNSS 1160
>03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956
Length = 397
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 592 TFIPSPSFIQHTPPPNYASAFDVYVDNPMPRPSRIYN 702
+++P P PPP Y S++ V +D P P P ++++
Sbjct: 352 SWVPPPPPPPPPPPPVYYSSY-VMLDRPPPPPPQLFS 387
>03_02_0458 +
8643804-8643904,8643994-8644091,8644206-8644504,
8645930-8646460
Length = 342
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 601 PSPSFIQHTPPPNYASAFDVYVDNPMPRPSRIYN 702
P P Q PP++ +A V VD +P P +N
Sbjct: 20 PPPQQQQQPVPPSFRNALPVPVDGQIPAPLPFFN 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,825,872
Number of Sequences: 37544
Number of extensions: 429911
Number of successful extensions: 1332
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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