Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29p01
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    27   3.5  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   3.5  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   3.5  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    26   4.6  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    26   4.6  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    26   6.1  

>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 22/80 (27%), Positives = 37/80 (46%)
 Frame = -1

Query: 624 TSTMISCMMALSIAYKLISCTADSQGYT*YVCSRIR*LPARRSPINKKQLLAASKRSSLR 445
           T  + + ++ALS+AY   +  + S        S++   P RRS  N    L    +  LR
Sbjct: 103 TDPVQAAVLALSVAYAKPTSVSLSPTDL-QAQSKLIEKPRRRSASNATGSLNKKNQDPLR 161

Query: 444 QFSVPKRATPAGRSSSARNT 385
           +FS+ + A  A  + S  N+
Sbjct: 162 RFSISESAGAAAPTPSPSNS 181


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -1

Query: 342 RKQYNVQAVSELGHSDTTQSLGARSRRSTSNV--DLLRASATQSKQRQEYGNHEPDASV 172
           RK +NV     LG SDT QS+   S      V  + LRAS TQS         E DASV
Sbjct: 285 RKLFNVFL---LGDSDTIQSVAQASLTQAVTVVYERLRASHTQSNSTSAL--PEEDASV 338


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 153 LNNGSCPPMRPARGYRTPVAVWIE*RLHEEGL 248
           L+N   P   PA  Y   V  WIE RLH++ +
Sbjct: 127 LDNNRKPVHLPAPQYIEYVLAWIENRLHDQNV 158


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 22/121 (18%), Positives = 53/121 (43%)
 Frame = -1

Query: 426 RATPAGRSSSARNTLLATRRAEYKQRD*RKQYNVQAVSELGHSDTTQSLGARSRRSTSNV 247
           ++TP  R++S+RNT +   R +           ++ ++EL   D       ++R+ +  V
Sbjct: 162 QSTPLNRNTSSRNTEMPLVRKDKPDFSNGHHDLIKQITEL--QDMLDKARDQARKKSRTV 219

Query: 246 DLLRASATQSKQRQEYGNHEPDASVDKTHYSKHGDRVCGALNIRMTLLVKDFYKFKLKIL 67
           D+L     +   +    + + + S    +   +  +   A N+    + K+F K + +++
Sbjct: 220 DILEGKVNELTHQLNMADSKYNESKVANNSQNNQIKTLKAQNLN---IHKNFQKIQSELI 276

Query: 66  Q 64
           Q
Sbjct: 277 Q 277


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 210 RQEYGNHEPDASVDKTHYSKHGDRVCGALNIRMTLLVKDFYKFKLKILQ 64
           RQ+Y   +  A V+K   SK   + CG++++   +LV+   K   +I++
Sbjct: 129 RQKYDTIQALAVVNKDTISKQMVKWCGSISLESIVLVEGIVKKSPEIIK 177


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/80 (22%), Positives = 40/80 (50%)
 Frame = -1

Query: 468 ASKRSSLRQFSVPKRATPAGRSSSARNTLLATRRAEYKQRD*RKQYNVQAVSELGHSDTT 289
           A++  S++Q S  + A+P     + + + +A R ++  Q       NV+++  +  +   
Sbjct: 2   ATRSVSMKQTS-QRAASPNKTQGAKKWSAVAARGSKIAQSATNDHRNVESIKVVPENRVR 60

Query: 288 QSLGARSRRSTSNVDLLRAS 229
             + A++  S+SNV  L +S
Sbjct: 61  GGVAAKATDSSSNVTSLASS 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,358
Number of Sequences: 5004
Number of extensions: 57684
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)