Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29p01
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    26   0.40 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   2.1  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   2.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   5.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.6  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.7  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 708 LGLFSLQVMYSCLVQPRQDSK*ASSNVTTST 616
           LGLF L  M++C+V         S+NVT ST
Sbjct: 603 LGLFLLLDMFNCVVVEETIPSLNSTNVTLST 633


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 19/78 (24%), Positives = 32/78 (41%)
 Frame = -1

Query: 372 RRAEYKQRD*RKQYNVQAVSELGHSDTTQSLGARSRRSTSNVDLLRASATQSKQRQEYGN 193
           R  EYK++D R +       +L    T++   +RSR    N      S    K+ ++Y  
Sbjct: 8   RNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQN------SYKNEKEYRKYRE 61

Query: 192 HEPDASVDKTHYSKHGDR 139
              + S DK    +  +R
Sbjct: 62  RSKERSRDKRERERSKER 79


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 19/78 (24%), Positives = 32/78 (41%)
 Frame = -1

Query: 372 RRAEYKQRD*RKQYNVQAVSELGHSDTTQSLGARSRRSTSNVDLLRASATQSKQRQEYGN 193
           R  EYK++D R +       +L    T++   +RSR    N      S    K+ ++Y  
Sbjct: 8   RNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQN------SYKNEKEYRKYRE 61

Query: 192 HEPDASVDKTHYSKHGDR 139
              + S DK    +  +R
Sbjct: 62  RSKERSRDKRERERSKER 79


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 294 YQNGQVHSQL 323
           Y NGQ HSQL
Sbjct: 372 YSNGQTHSQL 381


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 516 IGCGSKRITCNPENPPC 566
           IGC +++  C+  + PC
Sbjct: 91  IGCSAEKFECSKTSNPC 107


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 17/70 (24%), Positives = 30/70 (42%)
 Frame = -1

Query: 372 RRAEYKQRD*RKQYNVQAVSELGHSDTTQSLGARSRRSTSNVDLLRASATQSKQRQEYGN 193
           R  EYK++D R +       +L    T++   +RSR    N      S    ++ ++Y  
Sbjct: 241 RNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQN------SYKNEREYRKYRE 294

Query: 192 HEPDASVDKT 163
              + S D+T
Sbjct: 295 RSKERSRDRT 304


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 14  KIIILCDRLRKISSNKYCKIFSLNL*KSFTN 106
           +I + C  L + S NK C   SL + K+F N
Sbjct: 79  RINLKCS-LVEFSENKNCNAGSLTVKKNFAN 108


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
 Frame = +3

Query: 120 CSERRKHGHHVLNNGSCPPMRPARGYRTPVAVWIE*RLHEE-GLHCLSISCSVHQVIGWY 296
           CS R K GH    +G    + P +   +P     +  L E   L C      +   I W 
Sbjct: 589 CSARNKQGHSARRSGDVAVIVPPK--ISPFTADRDLHLGERTTLTCSVTRGDLPLSISWL 646

Query: 297 QNGQV--HSQLVHYT 335
           ++G+    S+ VH T
Sbjct: 647 KDGRAMGPSERVHVT 661


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,516
Number of Sequences: 438
Number of extensions: 4655
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)