Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29o24
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    29   0.38 
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    27   1.1  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.0  

>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 29.1 bits (62), Expect = 0.38
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = +1

Query: 130 ESGWRPGFGTKATMSTYFQYPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDI 309
           +SG R  +  K T+S     P PE ++E  K+A++   P K   +A ES     K  +++
Sbjct: 462 QSGPRSSYFPKKTVS-----PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENL 516

Query: 310 GVENTEENRRRYRQL 354
             + +  N   YR L
Sbjct: 517 --KESHVNETPYRGL 529


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 304 DIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIP 483
           D G+E +E NRR  +  +FS     S ++S     H TL    D  +  V++  + G +P
Sbjct: 494 DSGIEASESNRR--KSDIFSFSGRNSFSVSRPSSSHSTLSYANDSASSAVNVAGETGSLP 551


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 160 WY--RTPASILTPVALCLYPSFCL*V-ALFLFYLLNFYKISIQTYSTVFS 20
           WY  R PA  +  V + LYP + L   A+FL  ++ F   S+ T+   F+
Sbjct: 92  WYFIRAPARFILMVGITLYPLYVLLSWAVFLGIIVGFSLNSVFTFIDSFA 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,137
Number of Sequences: 5004
Number of extensions: 37750
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)