Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29o23
(331 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 26 1.3
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 25 3.0
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 25 3.9
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 3.9
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 24 5.2
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 24 5.2
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 24 5.2
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 23 9.0
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 23 9.0
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 23 9.0
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 9.0
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 26.2 bits (55), Expect = 1.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 170 RYPEIAVKIRRKNKPDTTPLIL 105
RYP+I+V + + KPD IL
Sbjct: 445 RYPDISVSVSKWKKPDARSFIL 466
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 25.0 bits (52), Expect = 3.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 152 PQFPDNDQKNVSE 190
P FP+ND KN SE
Sbjct: 57 PSFPENDPKNYSE 69
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 24.6 bits (51), Expect = 3.9
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2
Query: 164 DNDQKNVSEKKKDAQQKMQASRIVKTSFS 250
D D KNVS KKKD + + SR TS S
Sbjct: 351 DTDIKNVSTKKKDFE---ETSRDYYTSLS 376
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 24.6 bits (51), Expect = 3.9
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 164 DNDQKNVSEKKKDAQQKMQASRIV 235
D+ +K SEKK+ AQ+K+ A++ V
Sbjct: 184 DDFEKRESEKKRVAQEKVIAAKTV 207
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 24.2 bits (50), Expect = 5.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 293 YETVQDSSRVCKKIN 249
YE VQD+ R C+K++
Sbjct: 57 YENVQDARRACEKLS 71
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 24.2 bits (50), Expect = 5.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +2
Query: 116 ASCLAYSFGVFSPQFPDND 172
A C+A+ P FP ND
Sbjct: 227 AGCMAFEIATLQPIFPGND 245
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 24.2 bits (50), Expect = 5.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 326 FLI*KNNLLHEYETVQDSSRVCKKIN 249
FLI NNL+HE +T DS + ++
Sbjct: 502 FLIIFNNLVHETDTETDSETLLNDLD 527
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = +2
Query: 164 DNDQKNVSEKKKDAQQKMQASRIVKTSFS*FFYIHDLSL 280
DN+ K + + ++A M+ R+ +F F HD ++
Sbjct: 746 DNEVKKENNRIRNASSLMENPRVSTKTFDNFTLTHDSTI 784
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -3
Query: 200 PFSFPRHFFDRYPEI 156
PF F HF RYP +
Sbjct: 734 PFEFVEHFDSRYPVV 748
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 169 RSKKCLGKEKGRSTED 216
RS C+G EKG S ED
Sbjct: 670 RSLVCVGSEKGISLED 685
>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 104
Score = 23.4 bits (48), Expect = 9.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 112 NGVVSGLFFRRIFTAISG*RSKKCLGKEKGRSTEDAS 222
NG +G R+I+T+I R CL + G++T+ S
Sbjct: 48 NGTFTG---RQIYTSICKSRIPPCLKGKNGKTTKSES 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,897
Number of Sequences: 5004
Number of extensions: 22855
Number of successful extensions: 60
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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