Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29o23
         (331 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical ...    27   4.2  
AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical ...    27   4.2  
Z70269-3|CAA94222.1|  290|Caenorhabditis elegans Hypothetical pr...    26   5.5  
Z82285-9|CAB05303.1|  513|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z82264-13|CAB05168.1|  513|Caenorhabditis elegans Hypothetical p...    26   7.3  

>AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical
           protein Y45G12C.11 protein.
          Length = 779

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 86  LKFVLIVVSMASCLAYSFGVFSPQ 157
           LKF+L+ V M +CL++ +  + P+
Sbjct: 13  LKFLLVAVFMVTCLSHLYSSYYPE 36


>AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical
           protein F56A4.6 protein.
          Length = 796

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 86  LKFVLIVVSMASCLAYSFGVFSPQ 157
           LKF+L+ V M +CL++ +  + P+
Sbjct: 13  LKFLLVAVFMVTCLSHLYSSYYPE 36


>Z70269-3|CAA94222.1|  290|Caenorhabditis elegans Hypothetical
           protein ZK1086.3 protein.
          Length = 290

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 239 TSFS*FFYIHDLSLAQFHIHVINCFFRLK 325
           T+    +++HD+   Q  I +I+CF  LK
Sbjct: 248 TTIPFLYFLHDILKLQVRIKIISCFDSLK 276


>Z82285-9|CAB05303.1|  513|Caenorhabditis elegans Hypothetical
           protein T28F3.9 protein.
          Length = 513

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 89  KFVLIVV-SMASCLAYSFGVFSPQFPDNDQKNVSEKKK 199
           K++L+   S   CL   F V  PQ  DN   N+S+K+K
Sbjct: 48  KYLLLFFGSTVICLCI-FYVTKPQLNDNFDPNISDKRK 84


>Z82264-13|CAB05168.1|  513|Caenorhabditis elegans Hypothetical
           protein T28F3.9 protein.
          Length = 513

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 89  KFVLIVV-SMASCLAYSFGVFSPQFPDNDQKNVSEKKK 199
           K++L+   S   CL   F V  PQ  DN   N+S+K+K
Sbjct: 48  KYLLLFFGSTVICLCI-FYVTKPQLNDNFDPNISDKRK 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,266,245
Number of Sequences: 27780
Number of extensions: 129092
Number of successful extensions: 364
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)