Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29o22
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 37 0.003
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 36 0.006
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 34 0.015
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 33 0.026
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 33 0.046
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 33 0.046
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 33 0.046
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 31 0.11
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 30 0.32
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 29 0.74
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 29 0.74
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 28 0.98
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.3
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 27 1.7
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.3
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.0
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 27 3.0
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 4.0
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 26 5.2
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 25 6.9
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc... 25 6.9
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 25 6.9
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 6.9
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 25 9.1
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 25 9.1
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 9.1
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 259 IHCNKCFSQLEPGITLHLTSCGHMFCNNCLGNGLKDS-TCLVCR 387
+ C C L+ T H CGH +C CL N LK+S +C CR
Sbjct: 83 LECPICTEALQRPFTTH---CGHTYCYECLLNWLKESKSCPTCR 123
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 35.5 bits (78), Expect = 0.006
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = +1
Query: 271 KCFSQLEPGITLHLTSCGHMFCNNC----LGNGLKDSTCLVCRMPCSAMKLV 414
KC L+ L T CGH+FCN C LG C VCR K++
Sbjct: 205 KCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKVHPNKVI 256
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 34.3 bits (75), Expect = 0.015
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 265 CNKCFSQLEPGITLHLTSCGHMFCNNCL 348
CN CF + LT CGH+ C +CL
Sbjct: 174 CNVCFDEFNGTDCFQLTRCGHVSCQSCL 201
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 33.5 bits (73), Expect = 0.026
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 313 TSCGHMFCNNCL-GNGLKDSTCLVCRMPCSAMKLV 414
T CGH+FC +C+ G K S C +CR S K++
Sbjct: 269 TECGHIFCWSCINGWTSKKSECPLCRAFSSPSKII 303
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 32.7 bits (71), Expect = 0.046
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 310 LTSCGHMFCNNCLGNGL--KDSTCLVCRMPCSAMKLV 414
+ +CGH FC+NC+ K STC C P S ++
Sbjct: 652 IPNCGHAFCSNCMEPFYEHKTSTCPQCETPFSVSDIL 688
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 32.7 bits (71), Expect = 0.046
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 310 LTSCGHMFCNNCLGNGLK-DSTCLVCR 387
+T+CGH++C+ CL LK S+C +C+
Sbjct: 1104 ITTCGHLYCSFCLEAWLKHSSSCPMCK 1130
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 32.7 bits (71), Expect = 0.046
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 259 IHCNKCFSQLEPGITLHLTSCGHMFCNNCLGNGLKDS-TCLVCR 387
+ C CF L + ++ CGH FC CL L S C CR
Sbjct: 167 LECQICFGMLYDPV---VSPCGHTFCGPCLMQALTQSPQCPTCR 207
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 31.5 bits (68), Expect = 0.11
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 310 LTSCGHMFCNNCLGNGLKD-STCLVCRMP 393
+TSC H FC+ C+ + L++ C CR P
Sbjct: 41 ITSCSHTFCSFCIRDYLREHPMCPACRAP 69
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 29.9 bits (64), Expect = 0.32
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +1
Query: 265 CNKCFSQLEPGITLHLTS--CGHMFCNNCLGNGLKD-STCLVCR 387
C C+ + T CGH+F NCL L++ TC +CR
Sbjct: 107 CPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCR 150
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 28.7 bits (61), Expect = 0.74
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +1
Query: 313 TSCGHMFCNNC-LGNGLKDSTCLVC 384
T+CGH FC C + K TC+ C
Sbjct: 267 TTCGHHFCEQCAITRYRKTPTCIQC 291
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 28.7 bits (61), Expect = 0.74
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 259 IHCNKCFSQL--EPGITLHLTSCGHMFCNNC 345
I C KC ++L + ++ CGH+FC+ C
Sbjct: 145 IACAKCGNELVSDEKKSIFAAKCGHLFCSTC 175
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 28.3 bits (60), Expect = 0.98
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 295 GITLHLTSCGHMFCNNCLGNGLK-DSTCLVCR 387
G+ + CGH F N+CL + + +TC +CR
Sbjct: 48 GLRIAKIPCGHYFHNHCLESWCRVANTCPLCR 79
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 301 TLHLTSCGHMFCNNCLGNGLK---DSTCLVCR 387
T + T CGH +C C+ + LK + +C +C+
Sbjct: 207 TPYTTDCGHTYCYACIMSRLKLVNNVSCPICK 238
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 352 NGLKDSTCLVCRMPCSAMKLVPDMKQEIQDYFTDPE 459
N L+ CL C +PC KL+ + + + DP+
Sbjct: 141 NELESFRCLCCHVPCKNKKLLREHMNNKRHFRLDPK 176
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 451 DPEEL--IKKSCDVIQFQRQHRRRLLSYLLQSTKKFYAARNELKRVTEMCQKQHTQLKEY 624
DP +L +KK+C+ ++ ++Q L + T F N L E +K+ Q
Sbjct: 1350 DPTQLEELKKNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQANTK 1409
Query: 625 HKR 633
+ R
Sbjct: 1410 NTR 1412
>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 182 ALPAKYIFFKSKCFYYIIICKLQIKI 105
AL +YI F +KCF YI+ C + +
Sbjct: 49 ALCNEYIRFLAKCFLYILRCMSTVSL 74
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/67 (20%), Positives = 31/67 (46%)
Frame = -2
Query: 607 CVAFDTFQSHASVHCVPRKTFLSIVIDKRAISFYAAFETVSHRKTSLSTLQDQ*SNLGFL 428
C+ ++T Q A V + + ++S+ ++ HR +LS +D+ +
Sbjct: 415 CLNYET-QPLAPVISLSHRAYVSLPTQPELAKYHCLIVPTGHRINTLSCDEDEWDEIRNF 473
Query: 427 VSCLALI 407
+ C+AL+
Sbjct: 474 MKCIALM 480
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 376 LVCRMPCSAMKLVPDMKQEIQDYFTDPE 459
+VC P S KL+P +Q IQD+ P+
Sbjct: 885 MVCS-PKSYYKLIPSFEQLIQDFHIQPQ 911
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +1
Query: 310 LTSCGHMFCNNCLGNGL--KDSTCLVCRMPCSAMKLVP 417
++ CGH FC C+ + + C +C A ++P
Sbjct: 640 ISLCGHGFCYQCIQKRIETRQRRCPICGRGFGASDVIP 677
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 373 CLVCRMPCSAMKLVPDMKQEIQDYFTDPEELIK--KSCDVIQFQRQH 507
C++ S K + ++ I FTDP+ +++ K C ++ + +H
Sbjct: 30 CIILDAANSPAKQIDGGREHIDASFTDPDAIVELSKKCTLLTTEIEH 76
>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 491 SFKGSIEGDCSLIYYNRQKSFTRHAMN 571
SFKG IE S++ + KSFT N
Sbjct: 143 SFKGDIEASGSILTTHENKSFTLKLAN 169
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 483 IARLLYQLFRISEVILDFLFHVWH*FHSRTRHSTY*TRAVF 361
+A L + FR+S+ LDFL H F R +Y T F
Sbjct: 202 VANSLSEPFRLSKPKLDFLKHACTMFRGTHRFHSYTTEKGF 242
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 6.9
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +1
Query: 289 EPGITLHLTSCGHMFCNNCL 348
E + ++ CGH++C +CL
Sbjct: 220 EKPVAARMSRCGHVYCFSCL 239
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 307 HLTSCGHMFCNNCLGNGLKDSTCLVCRMPCSAMKLVPDMKQEIQDYF-TDPEELIKKSCD 483
H CG +FC NC + ++P S++ + P QD F DP+ L + D
Sbjct: 48 HCRWCGKLFCYNCCNS--------FAKLPVSSVSVDPTEDLIPQDMFIRDPDFLANDNDD 99
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 460 ELIKKSCDVIQFQRQHRRRLLSYLL 534
E++K+ C V+ H RLLS +L
Sbjct: 223 EVLKQICSVVYVDSYHSNRLLSRIL 247
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 9.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +1
Query: 304 LHLTSCGHMFCNNC 345
L T CGH++C +C
Sbjct: 207 LWATKCGHVYCGSC 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,684
Number of Sequences: 5004
Number of extensions: 46648
Number of successful extensions: 154
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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