Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29o20
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   3.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.1  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 393 TACKIHADPCNRAIII 346
           TA +IHAD C+R  ++
Sbjct: 129 TAYRIHADSCDRLWVL 144


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 485 SCSFAMKYKKSFVFGSWR 432
           SCS+    K S+ F  WR
Sbjct: 340 SCSYMAHEKLSYAFSVWR 357


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 396 GTACKIHADPCNRA 355
           G+AC+IH  P   A
Sbjct: 439 GSACRIHGSPATTA 452


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 586 LAEKSKELAHDQGYNIV 636
           LA K  +LA + GYN++
Sbjct: 92  LAVKDNKLASNAGYNVI 108


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 586 LAEKSKELAHDQGYNIV 636
           LA K  +LA + GYN++
Sbjct: 92  LAVKDNKLASNAGYNVI 108


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 586 LAEKSKELAHDQGYNIV 636
           LA K  +LA + GYN++
Sbjct: 92  LAVKDNKLASNAGYNVI 108


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 166 NFSVCQVTSEDHEAAVDAIKRHFLSE 243
           +F +  VT  DH  A ++  +H+ +E
Sbjct: 351 SFQMKNVTIVDHHTASESFMKHYENE 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,732
Number of Sequences: 438
Number of extensions: 3769
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)