Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29o18
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 85 7e-18
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 57 2e-09
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 55 1e-08
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 54 1e-08
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 52 6e-08
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 52 8e-08
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 48 1e-06
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 46 7e-06
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 44 2e-05
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 43 4e-05
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 43 5e-05
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 41 1e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 40 4e-04
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 39 8e-04
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 38 0.001
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 35 0.013
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 34 0.017
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 32 0.068
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 31 0.21
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 30 0.36
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 30 0.36
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 30 0.36
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 29 0.83
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.1
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 28 1.1
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.9
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 27 3.4
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 3.4
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 3.4
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 3.4
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 27 3.4
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 4.4
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 4.4
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 5.9
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 26 5.9
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.9
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 26 5.9
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 26 5.9
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 25 7.8
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 25 7.8
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.8
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 85.4 bits (202), Expect = 7e-18
Identities = 49/166 (29%), Positives = 92/166 (55%), Gaps = 6/166 (3%)
Frame = +1
Query: 169 RTVRILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADV-TPEQVPTNIIDICIP 345
+ VR+++ G+ GVGK+SLI +L+ E+ +P I+IP++ + + V ++D
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKVFPIISIPSNPDSNDDVSLVLVDTQSD 61
Query: 346 EQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKID 525
E +A EI++A+VIC+V+S + +++ +WLP+ R P++L NK +
Sbjct: 62 SNEREYLAAEIKKANVICLVYS--DNYSYERVSIFWLPYFRS---LGVNVPIVLCENKSE 116
Query: 526 LID-----YSVIDNIWDIAEEYPEVDRCIECSAKSLINVSEMXLQC 648
+D +++ + + E+ E++ CI CSA INV+E+ C
Sbjct: 117 DLDNYQGLHTIEHEMIPLINEFKEIEACILCSALEKINVNELFYMC 162
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 57.2 bits (132), Expect = 2e-09
Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 4/163 (2%)
Frame = +1
Query: 178 RILLLGEPGVGKTSLILSLVTEEFTE-HVPPKAEEITIPA-DVTPEQVPTNIIDICIPEQ 351
++LL+G+ GVGK+ L+L + +TE ++ + I ++ + V I D E+
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 352 SLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDLI 531
+ AH I IV+ V Q++ N + WL + E + +LVGNK D++
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNV-KQWLQEIDRYAVEGVNR--LLVGNKSDMV 126
Query: 532 DYSVIDNIWDIAEEYPEVDRC--IECSAKSLINVSEMXLQCTK 654
D V++ + +A+E+ + +E SAK NV + L ++
Sbjct: 127 DKKVVE--YSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSR 167
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 54.8 bits (126), Expect = 1e-08
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Frame = +1
Query: 157 ETVPRTVRILLLGEPGVGKTSLILSLVTEEF-TEHVPPKAEEITIPADVTPEQVPTNIID 333
++ P +++++G+ GKTSL+ F TE+VP E V + V + D
Sbjct: 3 QSQPIRRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWD 62
Query: 334 ICIPEQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVG 513
E+ +AH+I + F++D ++L ++T W+ + CP P ILVG
Sbjct: 63 TAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCP---NVPFILVG 119
Query: 514 NKIDL 528
K DL
Sbjct: 120 MKADL 124
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 54.4 bits (125), Expect = 1e-08
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 11/175 (6%)
Frame = +1
Query: 178 RILLLGEPGVGKTSLILSLVTEEFTEHV--PPKAEEITIPADVTPEQVPTNIIDICIPEQ 351
+I++LG+ GKTSL L++ T+ + V P E V + ++ D E+
Sbjct: 15 KIVILGDGAAGKTSL-LNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEE 73
Query: 352 SLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDL- 528
+ + HVI I F+VD +++L + T WLP V NCP ++LV K DL
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCP---GVKLVLVALKCDLR 130
Query: 529 ------IDYSVIDNIWD--IAEEYPEVDRCIECSAKSLINVSEMXLQCTKGSSAS 669
+D+S I + + A + R +ECSAK V+E + + + A+
Sbjct: 131 GADEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTEAARVALAA 185
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 52.4 bits (120), Expect = 6e-08
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Frame = +1
Query: 172 TVRILLLGEPGVGKTSLILSLVTEEF-TEHVPPKAEEITIPADVTPEQVPTNIIDICIPE 348
T++ +++G+ VGKT L++S T +F +++VP + + + E + D E
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQE 62
Query: 349 QSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDL 528
+ V + FSV + + W P V +CP P ++VG +IDL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCP---GVPCLIVGTQIDL 119
Query: 529 ID 534
D
Sbjct: 120 RD 121
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 52.0 bits (119), Expect = 8e-08
Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Frame = +1
Query: 178 RILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVPTNIIDICIPEQSL 357
+++++G+ G GKT L++ + F E P E I D+T + +I++ + + +
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYI-TDITYGP-NSKVIELALWDTAG 73
Query: 358 EQVAEEIE-----RAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKI 522
++ + + ++VI + FS+D +LN + W P V+ CP R P++LVG K
Sbjct: 74 QEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCP---RTPIVLVGLKA 130
Query: 523 DL 528
DL
Sbjct: 131 DL 132
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 48.0 bits (109), Expect = 1e-06
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Frame = +1
Query: 178 RILLLGEPGVGKTSLILSLVTEEFTE-HVPPKAEEITIPADVTPEQVPTNIIDICIPEQS 354
+++++G+ GKT L++ F E +VP E +V + + D E
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 355 LEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDL 528
+HV+ I FSVD E+L+ + W+ V C P++LVG K+DL
Sbjct: 68 DRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCS---NLPILLVGCKVDL 122
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 45.6 bits (103), Expect = 7e-06
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 11/180 (6%)
Frame = +1
Query: 148 MVYETVPRTV-----RILLLGEPGVGKTSLILSLVTEEFTEH----VPPKAEEITIPADV 300
M T P+ V +++LLG+ VGK+SL+L V ++F ++ + T+P D
Sbjct: 1 MASNTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDE 60
Query: 301 TPEQVPTNIIDICIPEQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCP 480
V I D E+ A+ +V+ + + +L K A W+ ++ P
Sbjct: 61 N-TSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEK-AKSWIKELQRQAP 118
Query: 481 EDYRKPVILVGNKIDLIDYSVIDNIWDIAEEYPEVDRCI--ECSAKSLINVSEMXLQCTK 654
E + L GNK+DL D AE Y + E SAK+ NV+E+ K
Sbjct: 119 EGI--VIALAGNKLDLAQERRAVEKAD-AEAYAAEANLLFFETSAKTAENVNELFTAIAK 175
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 44.0 bits (99), Expect = 2e-05
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 14/180 (7%)
Frame = +1
Query: 178 RILLLGEPGVGKTSLILSLVTEEFTE-HVPPKAEEITIPADVTPEQVPTNIIDICIPEQS 354
+++++G+ GKT L++ F E +VP E +V V + D E
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDY 67
Query: 355 LEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDL-I 531
+HVI I F+VD ++L+ + W+ V C P++LV K DL
Sbjct: 68 DRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSS---LPILLVACKADLRN 124
Query: 532 DYSVIDNIWD------IAEEYPEVD------RCIECSAKSLINVSEMXLQCTKGSSASHQ 675
D +I+ + EE V + +ECSAK+ V E+ T+ + H+
Sbjct: 125 DPKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFESATRAAMLKHK 184
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 43.2 bits (97), Expect = 4e-05
Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Frame = +1
Query: 175 VRILLLGEPGVGKTSLILSLVTEEFTEHVPPK--AEEITIPADVTPEQVPTNIIDICIPE 348
+++++LG+ GVGKT L+ V ++F+ A+ +T V + V + D +
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTA-GQ 67
Query: 349 QSLEQVAEEIERAHVIC-IVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKID 525
+ + + R C IV++V+ ++ + + + F+ ++ P I+VGN+ID
Sbjct: 68 ERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQID 127
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 42.7 bits (96), Expect = 5e-05
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Frame = +1
Query: 175 VRILLLGEPGVGKTSLILSLVTEEFT-EHVPPKAEEITI-PADVTPEQVPTNIIDICIPE 348
+++LL+G+ GVGK+ L+L + FT + + I ++ +++ I D E
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 349 QSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDL 528
+ A I +++ V +++ + + T W V + E+ K IL+GNK D
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVRT-WFSNVEQHASENVYK--ILIGNKCDC 126
Query: 529 IDYSVI--DNIWDIAEEYPEVDRCIECSAKSLINVSE 633
D + + +A+E + +E SAK+ +NV E
Sbjct: 127 EDQRQVSFEQGQALADELGV--KFLEASAKTNVNVDE 161
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 41.1 bits (92), Expect = 1e-04
Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Frame = +1
Query: 175 VRILLLGEPGVGKTSLILSLVTEEFTEHVPPK--AEEITIPADVTPEQVPTNIIDICIPE 348
+++++LGE GVGKTS++ V +F++ A+ +T V + V + D +
Sbjct: 9 LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTA-GQ 67
Query: 349 QSLEQVAEEIERAHVICI-VFSVDRQETLNKIATYWLPFVRDNCPEDYRK-PVILVGNKI 522
+ + + R C+ V+ V+ ++ + ++ F+ P + P IL+GNK+
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKV 127
Query: 523 DLIDYS-VIDNIWDIA--EEYPEVDRCIECSAKSLINVSE 633
D+ + ++ +A + E+ E SAK INV E
Sbjct: 128 DVEEQKRMVSKSKALAFCQARGEIP-YFETSAKEAINVQE 166
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 39.5 bits (88), Expect = 4e-04
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Frame = +1
Query: 157 ETVPRTVRILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVPTNIIDI 336
+ VP T +++L+G+ G GKT+ + +T EF K T+ +V P TN +I
Sbjct: 5 QNVP-TFKLVLVGDGGTGKTTFVKRHLTGEFE-----KKYIATLGVEVHPLHFHTNFGEI 58
Query: 337 C--IPEQSLEQVAEEIERAHVI---C--IVFSVDRQETLNKIATYWLPFVRDNCPEDYRK 495
C + + + ++ + + I C I+F V + T + +W VR C
Sbjct: 59 CFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRV-CENI--- 114
Query: 496 PVILVGNKIDLIDYSV 543
P++L GNK+D+ + V
Sbjct: 115 PIVLCGNKVDVKERKV 130
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 38.7 bits (86), Expect = 8e-04
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 4/156 (2%)
Frame = +1
Query: 178 RILLLGEPGVGKTSLILSLVTEEFTEHVPPK--AEEITIPADVTPEQVPTNIIDICIPEQ 351
+ +L+G+ GVGK++L++ EF E T + +++ I D E+
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 352 SLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDLI 531
+ A IV+ + +Q + + + WL +R++ D ++LVGNK DL+
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNVGR-WLKELREHA--DSNIVIMLVGNKTDLL 128
Query: 532 DYSVIDNIWDIAEEYPEVDRC--IECSAKSLINVSE 633
+ + A+ + + IE SA NV E
Sbjct: 129 HLRAVST--EEAQAFAAENNLSFIETSAMDASNVEE 162
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 37.9 bits (84), Expect = 0.001
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Frame = +1
Query: 169 RTVRILLLGEPGVGKTSLILSLVTEEF--TEHVPPKAEEITIPADVTPEQVPTNIIDICI 342
R +++ LGE VGKTSLI + ++F T + ++ + V + D
Sbjct: 10 RKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 69
Query: 343 PEQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKI 522
E+ + I + V IV+ + + W+ VR +D ++LVGNK
Sbjct: 70 QERFRSLIPSYIRDSSVAIIVYDITNHNSFVN-TEKWIEDVRAERGDDV--IIVLVGNKT 126
Query: 523 DLID 534
DL D
Sbjct: 127 DLAD 130
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 34.7 bits (76), Expect = 0.013
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Frame = +1
Query: 178 RILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVT--PEQVPTNIIDICIPEQ 351
RI +LG VGK+SL + V F E P E T ++ ++ T IID ++
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIEN-TFSKNIKYKGQEFATEIIDTAGQDE 66
Query: 352 SLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDL 528
++ H +V+S+ + + + + E P+++VGNK DL
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWV--PIVVVGNKSDL 123
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 34.3 bits (75), Expect = 0.017
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Frame = +1
Query: 172 TVRILLLGEPGVGKTSLILSLV----TEEFTEHVPPKAEEITIPADVTPEQVPTNIIDIC 339
T+++ ++G+ +GKTSL+++ V EE T+ + E TI + ++ +I D+
Sbjct: 10 TIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTI--SIRNTEITFSIWDLG 67
Query: 340 IPEQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYW 453
+ + + A I +F + R+ TLN I ++
Sbjct: 68 GQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWY 105
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 32.3 bits (70), Expect = 0.068
Identities = 20/46 (43%), Positives = 24/46 (52%)
Frame = +1
Query: 181 ILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVP 318
ILL G PGVGKTSLI +L E + V + T D+ VP
Sbjct: 1562 ILLEGSPGVGKTSLITALARETGHQLVRINLSDQTDLMDLFGSDVP 1607
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 30.7 bits (66), Expect = 0.21
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 169 RTVRILLLGEPGVGKTSLILSLVTEEFTEHVP 264
R VR+LLLG GKT+++ L+ E+ E P
Sbjct: 15 REVRVLLLGLDNAGKTTILKCLLNEDVNEVSP 46
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 29.9 bits (64), Expect = 0.36
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 184 LLLGEPGVGKTSLILSLVTEEFTEHVP 264
+L+GEPGVGKTS+ L + VP
Sbjct: 206 VLIGEPGVGKTSIAEGLARRIIDDDVP 232
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 29.9 bits (64), Expect = 0.36
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +1
Query: 181 ILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVPTNIID 333
+L+LGE G GK++L+ +L+ + PP + +T V PE PT +I+
Sbjct: 98 VLVLGESGSGKSTLVNTLLNRDV---YPPTQKSLTGDFGVNPE--PTVMIN 143
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 181 ILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEI 282
+LL G PG GKT L ++ TE E V K E+
Sbjct: 691 VLLYGPPGTGKTLLAKAVATELSLEFVSIKGPEL 724
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 28.7 bits (61), Expect = 0.83
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 145 KMVYETVPRTVRILLLGEPGVGKTSLILSLVTEE 246
K E V + ++LLGE G GKT+ I + EE
Sbjct: 517 KQFLEAVSKNQILVLLGETGSGKTTQITQYLAEE 550
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 157 ETVPRTVRILLLGEPGVGKTSLILSLV 237
+ P V + ++G PG GK++LI SLV
Sbjct: 69 DEAPPPVIVAVMGPPGTGKSTLIKSLV 95
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 181 ILLLGEPGVGKTSLILSLVTEEF 249
+L G PG GKTS IL+L E F
Sbjct: 55 MLFYGSPGTGKTSTILALSRELF 77
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 236 TNDKISDVLPTPGSPRRSIRTVRGTV 159
TND+ D L TP S RR R+ R ++
Sbjct: 2413 TNDQEEDALATPSSSRRDSRSKRASL 2438
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 184 LLLGEPGVGKTSLILSLV 237
L+LG PG GKT+ I SL+
Sbjct: 952 LILGMPGTGKTTTISSLI 969
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 181 ILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEIT 285
+LL G PG GKT L ++ TE + A +T
Sbjct: 495 MLLFGPPGTGKTMLARAVATESRSVFFSISASSLT 529
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 160 TVPRTVRILLLGEPGVGKTSLILSLVTE 243
T+PR L++G G GK++L ++L+ E
Sbjct: 603 TIPRNQFTLVVGSTGSGKSTLAMALLGE 630
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +1
Query: 463 VRDNCPEDYRKPVILVGNKIDLIDYSVIDNIWDIAEEYPEVDRCIECSAKSLINVSEMXL 642
VRD DYRK + LV + L +V +NI A + + IE K+ N+ E L
Sbjct: 1185 VRDYNINDYRKQIALVSQEPTLYQGTVRENIVLGASKDVSEEEMIEACKKA--NIHEFIL 1242
Query: 643 QCTKG 657
G
Sbjct: 1243 GLPNG 1247
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 358 EQVAEEIERAHVIC-IVFSVDRQETLNKIATYWLPFVRDNCPEDY 489
++ AE ++ +C IV+S ETL KI W+ + N ED+
Sbjct: 132 KRFAECFDKNPDLCLIVYSKLEVETLAKITPIWINVAKKNKKEDF 176
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +1
Query: 517 KIDLIDYSVIDNIWDIAEEYPEVDRCIECSAKSLINVS 630
K+D + + +DNI ++E +P + I+ + + + NV+
Sbjct: 1069 KLDFVLKNELDNILPLSEVFPSLFHAIQATLEKVSNVN 1106
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 181 ILLLGEPGVGKTSLILSLVTE 243
+LL G PG GKT L ++ TE
Sbjct: 415 MLLFGPPGTGKTMLARAVATE 435
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +1
Query: 184 LLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVPTNIIDICIPEQS 354
L+ G PG GKT IL ++ T + + +P + N I IC P +
Sbjct: 1290 LIQGPPGTGKTKTILGMIGAVLTS--SSQGLQFNVPGQT--RKTSKNKILICAPSNA 1342
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 154 YET--VPRTVRILLLGEPGVGKTSLILSLVTE 243
Y+T +P LL G PG GKTS + +L E
Sbjct: 234 YDTRGIPYRRGYLLYGPPGSGKTSFLYALAGE 265
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 306 WRYISRYSYFFSFWRHMFCK 247
WR I ++ F+ RH FCK
Sbjct: 6 WRSILYIAFLFAITRHAFCK 25
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 481 EDYRKPVILVGNKIDLIDYSVIDN-IWDIAEEYPEV 585
E K +ILV NK+DL+ SV + +A+EYP +
Sbjct: 244 EASHKHMILVLNKVDLVPTSVAAAWVKILAKEYPTI 279
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 169 RTVRILLLGEPGVGKTSLILSLVTEEFTEHVP 264
R +RIL++G GKT+++ L E +P
Sbjct: 16 REMRILMVGLDAAGKTTILYKLKLGEIVTTIP 47
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 163 VPRTVRILLLGEPGVGKTSL 222
+P+ ILL G PG GKT L
Sbjct: 176 IPQPKGILLYGPPGTGKTLL 195
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 169 RTVRILLLGEPGVGKTSLILS 231
R +L G PG GKTS IL+
Sbjct: 55 RVPHMLFYGPPGTGKTSTILA 75
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 7.8
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = -3
Query: 392 TCALSISSATCSKDCSGIQISIILVGTCSGVTSAGIVISSAFGGTCSVNSSVTNDKISDV 213
TC +S SS + S S I+ ++GT TS+ I+S+ S +SS ++ S
Sbjct: 113 TCTISTSSLSYSGTISSTSIAPSMIGT---RTSSSYFITSSSSTPSSSSSSSSSSPSSSS 169
Query: 212 LPTPGSPRRS 183
+ S + S
Sbjct: 170 SKSSSSSKSS 179
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,517
Number of Sequences: 5004
Number of extensions: 53282
Number of successful extensions: 280
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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