Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29o18
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.51 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.6  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
 Frame = +1

Query: 481 EDYRKPVILVGNKIDLIDYSVIDNIWDIA------EEYPEVDRCIECSAKSLINVSEM 636
           +D + P+I+  NKID  +  +I   +++A      EE     +C++ SA   IN+ E+
Sbjct: 242 KDAKVPIIVAINKIDKPNIDIIKVQYELAKHGIVIEELGGEIQCVKISALKGINLREL 299


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 428 VSCLSTENTMHITCALSISSATCSKDCSGIQISIILV 318
           +SCL    TM + C L     T     SG +++IIL+
Sbjct: 522 ISCLGIVATMAVACLLFHHRDTPVVRASGRELTIILL 558


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 428 VSCLSTENTMHITCALSISSATCSKDCSGIQISIILV 318
           +SCL    TM + C L     T     SG +++IIL+
Sbjct: 612 ISCLGIVATMAVACLLFHHRDTPVVRASGRELTIILL 648


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -3

Query: 281  ISSAFGG--TCSVNSSVTNDKISDVLPTPGSPRRSIRTVRGTVS*TIL 144
            + S  GG  TC V ++  NDK+   L     P   +  V  + S +IL
Sbjct: 1374 LQSQDGGDYTCQVENAQGNDKLHYTLTVQVPPSAPVLYVTSSTSSSIL 1421


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -3

Query: 281  ISSAFGG--TCSVNSSVTNDKISDVLPTPGSPRRSIRTVRGTVS*TIL 144
            + S  GG  TC V ++  NDK+   L     P   +  V  + S +IL
Sbjct: 1370 LQSQDGGDYTCQVENAQGNDKLHYTLTVQVPPSAPVLYVTSSTSSSIL 1417


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 438 NSHLLVTICKR*LPRRL*KACYSRRK 515
           NS + V +C R  PRR    C S  K
Sbjct: 98  NSTIAVCVCMRKCPRRHRPVCASNGK 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,823
Number of Sequences: 438
Number of extensions: 3720
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)