Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29o17
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    28   0.91 
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    26   3.7  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   8.5  

>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 112 IAKLASVPLEKPGFDALNMTAPFMVQMNPDGKW 210
           IAK   + L    F A++   PF+  M P GK+
Sbjct: 318 IAKSVGITLTLDDFQAVSNRTPFIADMKPSGKY 350


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 277 SKAVAAAHSYCTQCTSGNQKNDSKSNYVPV 366
           SKAV+  H+YC+Q  SG  +    +NY+ V
Sbjct: 158 SKAVSNLHAYCSQ--SGLYRKPLTTNYLTV 185


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 211 NSCKPENLDEERLKAVVQYLVKSKAVAAAHSYCTQCTSGNQ---KNDSKSNYVPVIMMPI 381
           NS   E +  + +  +  Y+  SKA  +A S     +   +   KN+S  +  PV+ MP+
Sbjct: 246 NSLSRELVSRQTITTLTDYMTDSKAPHSATSLINGVSIVIELIRKNNSDYDVTPVLQMPL 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,021,930
Number of Sequences: 5004
Number of extensions: 33444
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)