Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29o17
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,728...    30   1.2  
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184...    28   5.0  
06_03_1494 + 30554997-30555608,30555707-30555915,30556006-305561...    28   6.5  
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581...    28   6.5  
05_01_0313 - 2461487-2461861,2461929-2462513,2462819-2464154,246...    27   8.7  

>04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,
            7280242-7280547,7280643-7280857,7281395-7281689,
            7281906-7281983,7282070-7282705,7283016-7283102,
            7283945-7284265,7285503-7287599
          Length = 1483

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/35 (51%), Positives = 21/35 (60%)
 Frame = +2

Query: 479  RSRIQKKTMKVRRRKNMVLYCKGLRISIYCHSGEK 583
            R  I  K +KVR R N  L  KG+ ISI  +SGEK
Sbjct: 1234 RGDIDVKDLKVRYRSNTPLILKGITISI--NSGEK 1266


>04_01_0162 +
           1845295-1846317,1846430-1846565,1848436-1848626,
           1848780-1848887,1849001-1849204,1849294-1849525,
           1849602-1849751,1849830-1850007,1850416-1850519,
           1850611-1850933,1851274-1851459,1851672-1851899
          Length = 1020

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 281 FDFT-KYCTTAFKRSSSKFSGLQLFHLPS 198
           F F+ KYC  A   S +K++G Q++H PS
Sbjct: 619 FSFSDKYCDIASLGSLAKYTGGQVYHYPS 647


>06_03_1494 +
           30554997-30555608,30555707-30555915,30556006-30556155,
           30556254-30556312,30556852-30556961,30557216-30557322,
           30557443-30557581,30557705-30557821,30557918-30558025,
           30558221-30558292,30558783-30558948,30559044-30559165,
           30559245-30559382,30559462-30559604,30559699-30559761,
           30560107-30560170,30560238-30560373,30560478-30560551,
           30560640-30560734,30560829-30560860,30560973-30561175
          Length = 972

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 247 LKAVVQYLVKSKAVAAAHSYCTQCTSGNQKNDSKSNYVPV 366
           +K+VVQY  ++   A  H+Y      GNQ+   + NY+P+
Sbjct: 425 VKSVVQYFQETYGFAIQHTYLPCLQVGNQQ---RPNYLPM 461


>06_03_0650 +
           23157130-23157582,23157687-23157898,23157982-23158128,
           23158214-23158347,23158442-23158551,23158711-23158817,
           23159045-23159183,23159286-23159402,23159737-23159844,
           23159927-23159998,23160108-23160230,23160336-23160495,
           23160585-23160706,23160825-23160962,23161042-23161184,
           23161305-23161367,23161567-23161630,23161709-23161844,
           23162123-23162196,23162764-23162858,23162951-23162982,
           23163104-23163276
          Length = 973

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 235 DEERLKAVVQYLVKSKAVAAAHSYCTQCTSGNQKNDSKSNYVPV 366
           D+  +K+VV+Y  +       H +      GNQK   K+NY+P+
Sbjct: 393 DQMNMKSVVEYFKEMYGFTIQHPHLPCLQVGNQK---KANYLPM 433


>05_01_0313 -
           2461487-2461861,2461929-2462513,2462819-2464154,
           2464231-2464338,2464421-2464743
          Length = 908

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = +1

Query: 187 QMNPDGKWNSCKPENLDEERLKAVVQYLVKSKAVAAAHSYCTQCTSG-NQKNDSKSNYVP 363
           Q+ PD ++ SC      E+   A+  +  ++  V       ++C  G N +  S      
Sbjct: 305 QLWPDARYISCVTTGTMEQYFPAIKHFAGEALPVLGTDYLASECAIGINLERTSPPEETT 364

Query: 364 VIMMP-IYPADQCPFDMD 414
            +++P     +  PFDMD
Sbjct: 365 YVLLPRAAYFEFIPFDMD 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,976,667
Number of Sequences: 37544
Number of extensions: 187428
Number of successful extensions: 441
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)