Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29o14
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0024 + 25014274-25014375,25014655-25014720,25015117-250152...   156   1e-38
11_06_0617 - 25552308-25552978,25553384-25553454,25553691-255537...    29   2.7  
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603...    29   3.5  
12_02_0129 - 13981684-13982529                                         29   4.7  
12_02_0112 + 13783758-13784717                                         29   4.7  

>05_06_0024 +
           25014274-25014375,25014655-25014720,25015117-25015233,
           25015757-25015834,25015911-25016016,25016150-25016196,
           25016386-25016463,25016898-25016963,25017102-25017165,
           25017406-25017428
          Length = 248

 Score =  156 bits (379), Expect = 1e-38
 Identities = 73/173 (42%), Positives = 111/173 (64%)
 Frame = +2

Query: 167 RTGVQGLWRISSRSIQTTASRQHDSLFVHRDTPEDNPSIPFEFSQANQKRVEALLAIYPE 346
           R   + L  +++ S   +A+ +  S   H D+PE+NP +P+EF++AN K+V  +L+ YP 
Sbjct: 7   RLAARRLLGLATSSASESAAARRLSRSPHLDSPENNPDMPWEFTEANMKKVNEILSHYPS 66

Query: 347 GHKRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 526
            +K+  +IP+LDLAQ+Q GGW+P++AM+ +A+I+ +  +RVYEVATFYTMF R  +GKYH
Sbjct: 67  NYKQSGIIPMLDLAQQQHGGWVPVAAMNAIAKIVEVAPIRVYEVATFYTMFNRTKVGKYH 126

Query: 527 VQVCTTTPCWLRGSDAILNAIKQETNCEVGGNSPCGKFSVSEV*MFGSLCERP 685
           + VC TTPC +RGS  I  A+ +    +    +  G FSV E+   G     P
Sbjct: 127 LLVCGTTPCMIRGSREIEEALLEHLGVKRNEVTSDGLFSVGEMECMGCCVNAP 179



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 639 FLFQRFECLGACVNAPMIQV 698
           F     EC+G CVNAPMI V
Sbjct: 164 FSVGEMECMGCCVNAPMIAV 183


>11_06_0617 -
           25552308-25552978,25553384-25553454,25553691-25553727,
           25553807-25553927,25554309-25554428,25554834-25555130,
           25555286-25555288
          Length = 439

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 395 VVVPDPVKESWHLACDLQGKWPTKPLLSFD 306
           VVV D V +S HLA +  G W + P   FD
Sbjct: 313 VVVADVVMDSVHLAIEFTGNWSSHPDDHFD 342


>11_01_0730 -
           6037375-6037509,6037892-6038019,6038339-6038423,
           6038525-6038614,6040015-6040113,6040207-6040335,
           6041341-6041463,6041549-6041711,6042331-6042380,
           6042593-6042706,6042993-6043199,6043275-6043412,
           6044708-6044770,6044845-6044928,6045014-6045094,
           6045212-6045363,6045479-6045614,6045991-6046107
          Length = 697

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 524 HVQVCTTTPCWLRGSDAILNA-IKQETNCEVGGNSP 628
           H+  C +TP W R SD  LN   KQ+ + E G  +P
Sbjct: 289 HMITCPSTPEWKRSSDLDLNGEAKQDDDDENGDLAP 324


>12_02_0129 - 13981684-13982529
          Length = 281

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 191 RISSRSIQTTASRQHDSLFVHRDTPEDN 274
           R++ R + + A R HD+  +HRD   DN
Sbjct: 81  RVAMRQLLSGAKRMHDAGLMHRDLKPDN 108


>12_02_0112 + 13783758-13784717
          Length = 319

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 191 RISSRSIQTTASRQHDSLFVHRDTPEDN 274
           R++ R + + A R HD+  +HRD   DN
Sbjct: 119 RVAMRQLLSGAKRMHDAGLMHRDLKPDN 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,314,880
Number of Sequences: 37544
Number of extensions: 410069
Number of successful extensions: 919
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)