Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29o13
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 28 1.4
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 28 1.4
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 27 2.5
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 27 3.3
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 27 3.3
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 26 4.3
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 26 4.3
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 25 7.5
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 9.9
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 25 9.9
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 25 9.9
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub... 25 9.9
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 9.9
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 25 9.9
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 27.9 bits (59), Expect = 1.4
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Frame = +3
Query: 267 GIFLHWGVYSVPGFGSEWFWSNWKGGNRQCIDFMTKNYPPGFTYQEFAPAFKAEFFDPDK 446
GI H+ +P FG + +G DFM +N P Y+ F+ A+ F
Sbjct: 85 GIEGHFRRVGIPCFGPSALAARMEGSKVFSKDFMHRNNIPTAVYKSFSNYDHAKSFLDTC 144
Query: 447 WADLFVK----AGAKYVVLTSKHHEGFTLFPS 530
D+ +K A K V++ E F S
Sbjct: 145 TFDVVIKADGLAAGKGVIIPKTKKEAFEALES 176
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 231 RPLPEWYDKAKIGIFLHWGVYSVPGFG-SEWFW 326
R L +++ + IG++L W YS P G + W W
Sbjct: 2275 RWLQQFWATSNIGLYLPWAGYSGPYLGRTLWLW 2307
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 380 SSRIHLSGIRTRIQSRVFRSGQMGGSFRKSRSKIRSANK 496
SS +HLS T R+F +G + K+R K+ S N+
Sbjct: 47 SSMLHLSKGLTVKDVRIFFHDSIGSTLLKNRKKLNSENE 85
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 255 YHTTLATVVYPNRSNQENTAYLVFYYANYDHD 160
YH TLA + R N+++ + Y ++HD
Sbjct: 1025 YHLTLARLAQMTRLNEDSKKSIPLLYDRFNHD 1056
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/69 (23%), Positives = 36/69 (52%)
Frame = +1
Query: 403 NSHPHSKPSFSIRTNGRIFS*KPEQNT*C*QVNIMRASLCSRQNVRSVGIPSKWAQNAIS 582
N+ + KP F+I + FS E+N +++ + +SL + NV+ I + ++
Sbjct: 483 NNSLNDKPGFTIEQKDKNFSINNERNNFLQKLSTLDSSLAALVNVQRKLIKALISKERPQ 542
Query: 583 SGTWLRRCE 609
+GT +++ +
Sbjct: 543 NGTVIKKIQ 551
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 348 RQCIDFMTKNYPPGFTYQEFAPAFKAEFFDPDK 446
+ I T +YPP F Y E ++ A FF DK
Sbjct: 50 KSSISEWTLDYPPFFAYMECVLSWIAYFFGFDK 82
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +3
Query: 276 LHWGVYSVPGFGSEWFWSNWKGGNRQCIDFMTKNYPPG 389
LH+ + ++ G+ W N+ ++ D + NY PG
Sbjct: 181 LHYRIPTLDGYQQHNLWKNFTRWSQYFADNIVSNYRPG 218
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 301 PVLDPNGFGAIGKVVTDNASIS 366
P + NGFG IG++V NA ++
Sbjct: 4 PKVGINGFGRIGRIVLRNALVA 25
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 557 RSGPKTRYRRGPG*GGAKHKLEIRRL 634
RSG T GPG GG + I RL
Sbjct: 879 RSGSNTHSHAGPGFGGPSERKGISRL 904
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +3
Query: 441 DKWADLFVKAGAKYVVLTSKHHEGFTLFPSKRSFSWNSVEVGPKRDIVGDLAKAVR 608
D A+L +K+G +L H +GF + + GP D++ + A++
Sbjct: 98 DPEANLALKSGDVVKILLGAHIDGFASLVATTTVVSEEPVTGPAADVIAAASAALK 153
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 301 PVLDPNGFGAIGKVVTDNASIS 366
P + NGFG IG++V NA ++
Sbjct: 4 PKVGINGFGRIGRIVLRNAILT 25
>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 490
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +3
Query: 537 SFSWNSVEVGPKRDIVGDLAKAVRNTSLKFGVYHSLY 647
S VG + ++VGD + LKF +Y +Y
Sbjct: 454 SMGSTETSVGDQVEVVGDTTNVPIDGMLKFYIYQKIY 490
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Frame = +3
Query: 150 IHNRRDHSSHNKILNKRYSP---DWNDLDTRPL 239
+H+R H HN + + Y P +ND + L
Sbjct: 33 LHHRHKHEKHNDLTDSSYEPLTLSYNDTQIQQL 65
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 25.0 bits (52), Expect = 9.9
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 228 TRPLPEWYDKAKIGIFLHWGVYSVPGF---GSEWFWSNWKGGNRQCIDFMTKN 377
T P +W + IGI L WG+ G + KG N +C+ +T+N
Sbjct: 174 THPEAQW--RVPIGINLLWGILMFFGMLFLPESPRYLAVKGRNEECMKILTRN 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,489
Number of Sequences: 5004
Number of extensions: 63909
Number of successful extensions: 169
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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