Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29o13
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_05_0009 - 20048736-20049423,20049504-20049743,20049832-20050385     58   8e-09
04_04_0784 - 28044883-28045654,28046626-28046859,28047328-28047875     55   6e-08
12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110     30   1.5  
07_03_1012 + 23295976-23296264,23296475-23296548,23296972-232969...    29   3.4  
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352...    28   7.8  
06_03_0614 - 22753092-22753349,22754059-22754277,22754712-227549...    28   7.8  
06_01_0900 + 6926600-6927202                                           28   7.8  

>09_05_0009 - 20048736-20049423,20049504-20049743,20049832-20050385
          Length = 493

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
 Frame = +3

Query: 393 TYQEFAPAFKAEFFDPDKWADLFVKAGAKYVVLTSKHHEGFTLFPSKRSFSWNSVEVGPK 572
           T +E   AF+    D  +W D    AGA  VVL +KHH+GF L+PS  + + +SV   P 
Sbjct: 72  TGREPPAAFRPAALDASQWMDAAAAAGASLVVLVAKHHDGFCLWPS--AHTAHSVRASPW 129

Query: 573 R----DIVGDLAKAVRNTSLKFGVYHSLYE 650
           R    D+V + A A R   L  G+Y S ++
Sbjct: 130 RGGRGDVVREFADAARARGLDIGIYLSPWD 159


>04_04_0784 - 28044883-28045654,28046626-28046859,28047328-28047875
          Length = 517

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
 Frame = +3

Query: 417 FKAEFFDPDKWADLFVKAGAKYVVLTSKHHEGFTLFPSKRSFSWNSVEVGPKR----DIV 584
           F     D  +WA      G   VVLT+KHH+GF L+PS  + +  SV   P +    D+V
Sbjct: 78  FAPSALDAGQWARAAAAGGFGRVVLTAKHHDGFCLWPS--ALTNYSVAASPWKGGAGDVV 135

Query: 585 GDLAKAVRNTSLKFGVYHSLYEWFNPIY 668
           G+LA A R   +  G+Y S ++   P+Y
Sbjct: 136 GELAAAARAEGIGLGLYLSPWDRHEPVY 163


>12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110
          Length = 530

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 281 LGRLFCARF-WIRMVLEQLERW*PTMHRFHDEKL-SSRIHLSG 403
           +GR+FC R    R  LEQL RW   +HR     +  + +HL G
Sbjct: 179 IGRVFCFRVETTRWSLEQLNRWCAALHRGRARVIVVANLHLPG 221


>07_03_1012 +
           23295976-23296264,23296475-23296548,23296972-23296996,
           23297486-23297568,23297653-23297685,23298322-23298469,
           23298625-23298722
          Length = 249

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 357 IDFMTKNYPPGFTYQEFAPAFKAEFFDPDKWADLFVKAGAKYVVLTSKHHE 509
           +D + + + P  T  +   A KA   +PD +  L    G  Y+   +KH E
Sbjct: 188 MDILREGWSPALTISKVLLAIKAIITNPDPYCPLVPSIGHLYLTDRTKHDE 238


>07_01_0467 -
           3524598-3524837,3524939-3525466,3526242-3526892,
           3527015-3527500,3527580-3527792,3527885-3528174,
           3528276-3528418,3528633-3528855,3528983-3529160,
           3529598-3529867
          Length = 1073

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 459 FVKAGAKYVVLTSKHHEGFTLFPSKRSFSWNSVEVGPKRDIVGDLAKAVRNTSLKF 626
           ++K  A   V  +K+H    L      F+W    V P+R ++    K   NT+LKF
Sbjct: 344 YLKGKAFKCVSAAKYHT-VALGTDGEVFTWGHRLVTPRRAVISRCLKKGGNTNLKF 398


>06_03_0614 -
           22753092-22753349,22754059-22754277,22754712-22754960,
           22755186-22755275,22755379-22755456,22755562-22756337,
           22757042-22757384
          Length = 670

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 89  LLINDEVIFLGILIRIRERRHT 154
           +L N + IF+G+ IR +ER HT
Sbjct: 212 MLANGQKIFVGLFIRRQEREHT 233


>06_01_0900 + 6926600-6927202
          Length = 200

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 530 KTFVQLEFRRSGPKTRYRRGPG*GGAKHKLEIRRLSFAL 646
           KTF++  FRRS     +  G G GG   KL    LS+AL
Sbjct: 89  KTFIR-RFRRSPRHHHHGGGGGGGGGGRKLNYDPLSYAL 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,676,639
Number of Sequences: 37544
Number of extensions: 416557
Number of successful extensions: 958
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)