Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29o13
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical pr...   213   7e-56
AF003151-6|AAK18909.1|  314|Caenorhabditis elegans Collagen prot...    30   1.7  
AL021479-4|CAA16319.1|  301|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z35663-16|CAA84726.2|  462|Caenorhabditis elegans Hypothetical p...    28   5.3  
Z35598-6|CAA84654.1|  580|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z82287-4|CAB05314.1|  433|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Y08816-1|CAA70050.2|  433|Caenorhabditis elegans TFIIE-alpha pro...    28   6.9  

>Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical
           protein W03G11.3 protein.
          Length = 482

 Score =  213 bits (521), Expect = 7e-56
 Identities = 86/163 (52%), Positives = 120/163 (73%), Gaps = 2/163 (1%)
 Frame = +3

Query: 186 ILNKRYSPDWNDLDTRPLPEWYDKAKIGIFLHWGVYSVPGFGSEWFWSNWKGG--NRQCI 359
           + N  Y+PDW  LD RPLP WYD +K GIF HWG+YSVP F SEW W  WKG   ++  +
Sbjct: 13  LANCDYTPDWESLDNRPLPSWYDDSKFGIFCHWGLYSVPAFRSEWMWWYWKGTQPDKDVV 72

Query: 360 DFMTKNYPPGFTYQEFAPAFKAEFFDPDKWADLFVKAGAKYVVLTSKHHEGFTLFPSKRS 539
           +F+ KNY PG TY +FA  F AE+F+ +++A+    +GA+Y V TSKHHEGFT++PS+ S
Sbjct: 73  NFVDKNYKPGTTYADFAKDFTAEYFNANQFAETVKTSGARYFVFTSKHHEGFTMWPSRTS 132

Query: 540 FSWNSVEVGPKRDIVGDLAKAVRNTSLKFGVYHSLYEWFNPIY 668
           ++WNS+++GPKRDIVG+L  A + T + FG+Y S +EWF+P++
Sbjct: 133 WNWNSMDIGPKRDIVGELRDAFKKTDVHFGLYFSQFEWFHPMF 175


>AF003151-6|AAK18909.1|  314|Caenorhabditis elegans Collagen protein
           52 protein.
          Length = 314

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +3

Query: 396 YQEFAPAFKAEFFDPDKWADLFVKAGAKYVVLTSKHH--EGFTLFPSKRSFSWNSVEVGP 569
           ++ FA +++ + +DP  +    V A     VL S+HH  +           S N V+V  
Sbjct: 30  FRRFATSYRTQQYDPTLYVQKMVPADTYQSVLASEHHLPDAVAAVDGSSLGSINGVDVRK 89

Query: 570 KRDIV 584
           K  +V
Sbjct: 90  KEKLV 94


>AL021479-4|CAA16319.1|  301|Caenorhabditis elegans Hypothetical
           protein Y22F5A.6 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 576 DIVGDLAKAVRNTSLKFGVYHSLYEW 653
           + + D+ ++ +N  L  G+Y S Y+W
Sbjct: 175 EFIQDMIRSAKNLGLSVGIYTSFYDW 200


>Z35663-16|CAA84726.2|  462|Caenorhabditis elegans Hypothetical
           protein T04A8.3 protein.
          Length = 462

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 156 NRRDHSSHNKILNKRYSP-DWNDLDTRPLPEWYDKAKI 266
           N++DH+S    +++   P  WND  TR    W D +K+
Sbjct: 111 NQQDHTSTIAFMHREALPFRWNDYFTRVSRIWMDASKV 148


>Z35598-6|CAA84654.1|  580|Caenorhabditis elegans Hypothetical
           protein F10F2.8 protein.
          Length = 580

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 156 NRRDHSSHNKILNKRYSP-DWNDLDTRPLPEWYDKAKI 266
           N++DH+S    +++   P  WND  TR    W D +K+
Sbjct: 129 NQQDHTSTIAFMHREALPFRWNDYFTRVSRIWMDASKV 166


>Z82287-4|CAB05314.1|  433|Caenorhabditis elegans Hypothetical
           protein ZK550.4 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -2

Query: 378 NFSS*NRCIVGYHL--SNCSKTIRIQNRAQNRRPNVGKCLFLLYHTTLATVVYPNRSNQE 205
           NF S    I+ YH+  + C +   ++ R Q  +  + + L  L    L       + N+ 
Sbjct: 37  NFFSSEHFIIVYHIMRAQCIREENLKARIQFDQKMLRQLLASLKAEKLVKERTITQKNEN 96

Query: 204 N-TAYLVFYYANY 169
           N T  ++FYY NY
Sbjct: 97  NRTVSIIFYYINY 109


>Y08816-1|CAA70050.2|  433|Caenorhabditis elegans TFIIE-alpha
           protein protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -2

Query: 378 NFSS*NRCIVGYHL--SNCSKTIRIQNRAQNRRPNVGKCLFLLYHTTLATVVYPNRSNQE 205
           NF S    I+ YH+  + C +   ++ R Q  +  + + L  L    L       + N+ 
Sbjct: 37  NFFSSEHFIIVYHIMRAQCIREENLKARIQFDQKMLRQLLASLKAEKLVKERTITQKNEN 96

Query: 204 N-TAYLVFYYANY 169
           N T  ++FYY NY
Sbjct: 97  NRTVSIIFYYINY 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,206,697
Number of Sequences: 27780
Number of extensions: 362278
Number of successful extensions: 852
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)