Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29o12
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac...    27   1.8  
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    26   2.4  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    26   3.2  
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    25   4.3  
SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr ...    25   5.6  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   5.6  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   5.6  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   7.4  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    24   9.8  

>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 205

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +1

Query: 70  MSQDTKDEFSDVSIPPILEDVNSWVQDYLLQPEKLKIHKWERSQTHWHRKPNIDSLFLL 246
           MSQD K +  +VS     +   + ++    Q EK KI  WE ++     + N+D++ +L
Sbjct: 1   MSQDQKPKVLEVSNLENQDAKWTSLKKIRWQDEKGKIRFWEMAERTTRSEANVDAVAIL 59


>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 196 SQTHWHRKPNIDSLFLLDDDDENEPDTTLEVIM 294
           ++ HWH   ++   + L +D  +  D TLEV+M
Sbjct: 169 NKNHWHLFSDLADDYSLLEDSLDPEDETLEVLM 201


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 154 LLQPEKLKIHK--WERSQTHWHRKPNIDSLFLLDDDDENEPDTTLEVIMLKKIR 309
           L+ P+++   +  W     H+ +K N+ SLF   DD   EP  +    +L  IR
Sbjct: 38  LMLPDRVHERREDWSLFFIHFSKKSNVFSLFSNVDDINFEPSDSNMYYVLNTIR 91


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 256 HHHLAKIRNLYWVFYANAFEN 194
           HHH+ +  ++++  YAN FE+
Sbjct: 142 HHHIGQESSIFYEEYANYFES 162


>SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 80

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 440 ILIKNYFSGKATLGRSYLVNYQ 375
           I++   F GK+TL R  LVN++
Sbjct: 36  IIVSPLFEGKSTLARHRLVNHK 57


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 229 DSLFLLDDDDENEPDTTLEVIMLKKIRWLLN 321
           D LFL+  + E +P    E I  K +R LLN
Sbjct: 28  DDLFLVQVEPEVDPVVAAEAIGAKYVRPLLN 58


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +1

Query: 136 SWVQDYLLQPE--KLKIHKWERSQTHWHRK 219
           +W+ ++    +  ++KI KWE+    W+RK
Sbjct: 458 TWIINFFKSEKLTEIKIGKWEKIDDKWNRK 487


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
            Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 268  VRSHHHHLAKIRNLYWVFYANAF 200
            V+   H   K+RN YW  Y +A+
Sbjct: 1135 VQGLFHPSRKVRNTYWTSYNSAY 1157


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 196 SQTHW-HRKPNIDSLFLLDDDDENEPDTTLEVIM 294
           S  +W +   N DS F L DD   E    LEVI+
Sbjct: 281 SSPNWKYSISNPDSFFQLPDDSNEEVHIYLEVIV 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,724,566
Number of Sequences: 5004
Number of extensions: 34207
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)