Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29o12
         (461 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0961 + 9566730-9566998,9567096-9567187,9567294-9567427,956...    29   1.8  
06_03_0293 + 19212963-19212965,19213900-19214235,19214658-192148...    27   5.6  
06_03_0291 + 19198302-19198333,19199218-19199734,19200171-192003...    27   5.6  
04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814           27   5.6  
11_03_0073 - 9621199-9621312,9621401-9621476,9621553-9621619,962...    27   9.7  
04_01_0288 + 3824337-3826385                                           27   9.7  

>12_01_0961 +
           9566730-9566998,9567096-9567187,9567294-9567427,
           9567542-9567591,9569026-9569100,9569179-9569734
          Length = 391

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 193 RSQTHWHRKP-NIDSLFLLDDDDENEPDTTLE 285
           R +  W + P +I  +  L DDDE +PDTT +
Sbjct: 90  RKRRSWRQPPGSIPPVVFLLDDDEKKPDTTAD 121


>06_03_0293 +
           19212963-19212965,19213900-19214235,19214658-19214870,
           19216134-19216408,19216504-19216615,19217181-19217417,
           19217445-19217462
          Length = 397

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 127 DVNSWVQDYLLQPEKLKIHKWERSQTHWHRKPNIDSLFLL 246
           D + W+  Y L PE LK       +  WH+   +D   LL
Sbjct: 332 DTDQWMS-YRLLPENLKERIRRHEKYRWHQTSGVDEELLL 370


>06_03_0291 +
           19198302-19198333,19199218-19199734,19200171-19200383,
           19201067-19201111,19201671-19201945,19202041-19202152,
           19202453-19202539,19202727-19202963,19204127-19204825
          Length = 738

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 127 DVNSWVQDYLLQPEKLKIHKWERSQTHWHRKPNIDSLFLL 246
           D + W+  Y L PE LK       +  WH+   +D   LL
Sbjct: 446 DTDQWMS-YRLLPENLKERIRRHEKYRWHQTSGVDEELLL 484


>04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814
          Length = 582

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 166 EKLKIHKWERSQTHWHRKPNIDSLFLLDDDDENEPDT 276
           ++L +H+   S  H  ++  +DS+ + DDDD + PD+
Sbjct: 197 DELLLHR-AHSLFHVCKRGIVDSVIINDDDDSDNPDS 232


>11_03_0073 -
           9621199-9621312,9621401-9621476,9621553-9621619,
           9621655-9621751,9621898-9621996,9622348-9622358,
           9622716-9622784,9622871-9623195,9623287-9623457,
           9623538-9623713,9624173-9624414,9624481-9624542,
           9625305-9625340,9626103-9626262,9626372-9626606,
           9626694-9626949,9627062-9627176,9628388-9628450,
           9628592-9629325
          Length = 1035

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 229 DSLFLLDDDDENEPDTTLEVIMLKKIRWLLN 321
           D +  + DDD++EP ++LE  M + +R LL+
Sbjct: 62  DGINAVSDDDDDEPLSSLERGMAEVVRLLLD 92


>04_01_0288 + 3824337-3826385
          Length = 682

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 166 EKLKIHKWERSQTHWHRKPNIDSLFLLDDDDENEPDT 276
           ++L +H+   S  H   +  +DS+ + DDDD + PD+
Sbjct: 197 DELLLHR-AHSLFHVCERGIVDSVIINDDDDSDNPDS 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,828,858
Number of Sequences: 37544
Number of extensions: 177813
Number of successful extensions: 399
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)