Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29o10
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...   145   4e-36
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    27   2.9  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   3.8  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   5.1  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    26   5.1  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   6.7  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   6.7  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   8.8  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   8.8  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    25   8.8  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  145 bits (352), Expect = 4e-36
 Identities = 74/161 (45%), Positives = 97/161 (60%)
 Frame = +3

Query: 126 SHDAYYNYFLNLPFPKNKIFATYVWIDASGINLRSKDRILDKEPCDLEMVPKWSYDGSST 305
           S  A  N + +LP    K+ A Y+WID    +LRSK   LD +P  ++ +  W++DGSST
Sbjct: 11  SKAAILNKYADLP-QNGKVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGSST 68

Query: 306 GQSDLKDSDITLLPVAVYRDPFRKSPHIIVLCETYSSEGLPTPTNHRVSSAITLSKICDQ 485
           GQ+   +SD  L PVA+Y DPFR+  +I+VL   Y+++G P   NHR + A  L K  D+
Sbjct: 69  GQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADGSPNGFNHRDACAKLLEKHADK 128

Query: 486 EPWFGIEQEYTMFDRDHWPLGWPKPRGYPDQDSKNSYCGVG 608
           E WFGIEQEYTM D    P GWPK  G+P       YCGVG
Sbjct: 129 ETWFGIEQEYTMLDYYDRPFGWPK-GGFPGPQGP-FYCGVG 167


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 438 NHRVSSAITLSKICDQEPWFGIEQE 512
           NHRV+S +T +   + +P F IEQ+
Sbjct: 473 NHRVNSNLTANNSLNDKPGFTIEQK 497


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/48 (27%), Positives = 29/48 (60%)
 Frame = +3

Query: 348  VAVYRDPFRKSPHIIVLCETYSSEGLPTPTNHRVSSAITLSKICDQEP 491
            +A+ RD F ++  ++V CET+S++G     N+  +  + L+ + + +P
Sbjct: 1152 MALQRDAFIRA--LVVKCETFSTQGHKDKDNYFQNYQLLLNWLENSDP 1197


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 24/92 (26%), Positives = 36/92 (39%)
 Frame = -3

Query: 589 FLESWSGYPRGFGHPKGQ*SRSNIVYSCSIPNHGSWSQILLKVIADDTLWFVGVGKPSLE 410
           F+ES +G P GF  P  Q   +N     S   H   + I   ++          G  S  
Sbjct: 375 FIESGAGQPLGFNAPSNQEFSANATALVSPGPHSVSTTINTNIVQATISQSSTSGSSSGS 434

Query: 409 YVSHKTIICGLLRKGSLYTATGSSVISESFRS 314
             +  T     +  GS   ++GSS +S S+ S
Sbjct: 435 SSASTTASSSSVSSGS-SISSGSSSMSTSYTS 465


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 270 MVPKWSYDGSSTGQSDLKDSDITLLPVAVYRDPF 371
           M P+    GS T  SD+    +TL+ VA+ R PF
Sbjct: 246 MAPERISGGSYTISSDIWSLGLTLMEVALNRFPF 279


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 343  SSVISESFRSDCPVELPSYDHFGTISKSQGSLSNIR 236
            S +  +S R+DC   LP  + FG++       S++R
Sbjct: 1010 SRISMDSMRNDCEAFLPKKEKFGSLRTLHSFESSMR 1045


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 388 ICGLLRKGSLYTATGSSVISESF 320
           IC L + G + TATGSS+ S  +
Sbjct: 705 ICSLTQDGQIATATGSSLQSVGY 727


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +3

Query: 129 HDAYYNYFLNLPFPKNKIFATYVWIDASGINLRSKDRILDKEPCDLEMVPKWSYD 293
           HD +  Y+    FP N I      I     +L     +L+  P ++E V   SY+
Sbjct: 360 HDYFLKYYKAAKFPTNNIRTPIYLIWGGSDSLVDIQAMLNALPAEVEHVKVDSYE 414


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 33  FRSIFLSKNLVYKNMKHVYYLSTSSIFGH 119
           F   F S NL   NMK + Y+  +S F H
Sbjct: 865 FARQFKSSNLFCDNMKMLGYIPRASTFAH 893


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
 Frame = +3

Query: 168 PKNKI---FATYVWIDASGINLRSKDRILDKE 254
           PKNKI        W+   G  LR  DR  DKE
Sbjct: 310 PKNKIRQKLHLRAWVSFLGSALRESDRNFDKE 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,728
Number of Sequences: 5004
Number of extensions: 64734
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)