Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29o08
         (334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   1.3  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    24   5.3  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    24   5.3  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    24   7.0  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    23   9.2  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 185 LHAKTFFDV*IIISGNGFWLKYFIRIVYYNSIFFAMEIRKKQIIF 51
           +H++ F +    +      L+  +  + YN I F  ++RK+ IIF
Sbjct: 588 IHSQNFMETNADMFNRFEALQCLLSFLEYNKILFTPDVRKRVIIF 632


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 34  DK*TI*NIICFLRISIAKKMEL**TILIKYFNQNPFPEIIIY 159
           +K +I N++CF    +   +E+    L ++FN  P  +  +Y
Sbjct: 254 EKGSIGNLLCFAVEHVNNHVEITDAFLKEFFNDQPTDDTKVY 295


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -2

Query: 105 LLQFHFFCNGNTQKTDYILNCLFIGHSESHCHGT 4
           L  FH FCN  +    Y  N LF   + S  + T
Sbjct: 319 LFTFHVFCNQLSNNLAYQQNLLFTSLNVSDLNST 352


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 209 KFCLKIFFLHAKTFFDV*IIIS--GNGFWLKYFIRIVYY 99
           K  +    L   TF D+  I +    G W+ + IRI+YY
Sbjct: 105 KLFIATCLLSISTFIDMLAIYAYPDTGEWMVWVIRILYY 143


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 161 HQKTFWHEGRKFSDKTCNIEALDFSLNSEDY 253
           H + FW E R + +      ALD++    +Y
Sbjct: 331 HDEKFWEEFRSYYEYMGRPSALDYAKRLTEY 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,271,492
Number of Sequences: 5004
Number of extensions: 24740
Number of successful extensions: 45
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)