Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29o08
         (334 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42448| Best HMM Match : Dynamin_N (HMM E-Value=2.5)                 27   5.0  
SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28)             27   5.0  
SB_24573| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  

>SB_42448| Best HMM Match : Dynamin_N (HMM E-Value=2.5)
          Length = 412

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 227 DFSLNSEDYIVLGNIH*NRKMLDK-RIKMKQVE*KKK 334
           DF L  ED+  +GNI    +  DK  +K K  E K+K
Sbjct: 173 DFQLKEEDFSTIGNIIEKAEEYDKAHVKGKVFEVKRK 209


>SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28)
          Length = 552

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/57 (21%), Positives = 29/57 (50%)
 Frame = +2

Query: 164 QKTFWHEGRKFSDKTCNIEALDFSLNSEDYIVLGNIH*NRKMLDKRIKMKQVE*KKK 334
           Q+T W  G+K  D+   ++ +  SL   D  +   +   +K   +++++++   K+K
Sbjct: 436 QRTIWSSGKKVEDEEVQLQTIKTSLEEIDGQITTVLGKLQKAETRQVQLRETYEKQK 492


>SB_24573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 227 DFSLNSEDYIVLGNIH*NRKMLDK-RIKMKQVE*KKK 334
           DF L  ED+  +GNI    +  DK  +K K  E K+K
Sbjct: 118 DFQLKEEDFSTIGNIIEKAEEYDKAHVKGKVFEVKRK 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,532,757
Number of Sequences: 59808
Number of extensions: 155156
Number of successful extensions: 213
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)