Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29o08
         (334 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97189-7|AAK68257.3|  782|Caenorhabditis elegans Hypothetical pr...    26   5.7  
Z81125-4|CAB03383.3|  594|Caenorhabditis elegans Hypothetical pr...    26   7.5  
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    25   10.0 
U40409-6|AAP40535.1|   75|Caenorhabditis elegans Activator of g ...    25   10.0 
U40409-5|AAL27247.1|  589|Caenorhabditis elegans Activator of g ...    25   10.0 
U40409-4|AAA81387.1|  579|Caenorhabditis elegans Activator of g ...    25   10.0 

>U97189-7|AAK68257.3|  782|Caenorhabditis elegans Hypothetical
           protein C48B6.8 protein.
          Length = 782

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 219 SILQVLSENFLPSCQNV 169
           +ILQ+ S+NFLPS  N+
Sbjct: 64  AILQMASDNFLPSMNNI 80


>Z81125-4|CAB03383.3|  594|Caenorhabditis elegans Hypothetical
           protein T22A3.6 protein.
          Length = 594

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 18  EIQNGR*IDNLKYNLFFAYFHCKKNGIVINNSNKIF 125
           E++  R  D+ + N+ FA    KKNGI+    +KI+
Sbjct: 59  EMEANREYDDFRRNVTFAKRQHKKNGIIRALGHKIY 94


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
           protein F47C12.1 protein.
          Length = 1827

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 203 KTCNIEALDFSLNSEDYIVLGN 268
           K CN +  DFSL +ED +++ N
Sbjct: 34  KFCNFQFDDFSLRAEDSLIVYN 55


>U40409-6|AAP40535.1|   75|Caenorhabditis elegans Activator of g
           protein signallingprotein 3, isoform c protein.
          Length = 75

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +2

Query: 152 LFTHQKTFWHEGRKFSDKTCNIEALDFSLNSEDYIVLGNIH*NRKMLDKRIK 307
           LF  QK  + +G     K   +   DFSL S  Y  LGN H   K  ++ +K
Sbjct: 16  LFRMQK--YEKGIDLLKKALEVGTDDFSLLSAIYCQLGNAHTMLKDYEQALK 65


>U40409-5|AAL27247.1|  589|Caenorhabditis elegans Activator of g
           protein signallingprotein 3, isoform b protein.
          Length = 589

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +2

Query: 152 LFTHQKTFWHEGRKFSDKTCNIEALDFSLNSEDYIVLGNIH*NRKMLDKRIK 307
           LF  QK  + +G     K   +   DFSL S  Y  LGN H   K  ++ +K
Sbjct: 16  LFRMQK--YEKGIDLLKKALEVGTDDFSLLSAIYCQLGNAHTMLKDYEQALK 65


>U40409-4|AAA81387.1|  579|Caenorhabditis elegans Activator of g
           protein signallingprotein 3, isoform a protein.
          Length = 579

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +2

Query: 152 LFTHQKTFWHEGRKFSDKTCNIEALDFSLNSEDYIVLGNIH*NRKMLDKRIK 307
           LF  QK  + +G     K   +   DFSL S  Y  LGN H   K  ++ +K
Sbjct: 16  LFRMQK--YEKGIDLLKKALEVGTDDFSLLSAIYCQLGNAHTMLKDYEQALK 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,898,605
Number of Sequences: 27780
Number of extensions: 135794
Number of successful extensions: 327
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)