Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29o05
         (693 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-1685|ABC66175.1|   94|Drosophila melanogaster CG33977-P...    88   9e-18
BT030188-1|ABN49327.1|  126|Drosophila melanogaster IP17949p pro...    30   3.4  
BT023906-1|ABA81840.1|  914|Drosophila melanogaster GH18655p pro...    29   7.9  
AJ006524-1|CAA07085.1|  914|Drosophila melanogaster coatomer, be...    29   7.9  
AJ006523-1|CAA07084.1|  914|Drosophila melanogaster coatomer, be...    29   7.9  
AE014134-2340|AAF53294.2|  914|Drosophila melanogaster CG6699-PA...    29   7.9  

>AE014297-1685|ABC66175.1|   94|Drosophila melanogaster CG33977-PA
           protein.
          Length = 94

 Score = 88.2 bits (209), Expect = 9e-18
 Identities = 43/92 (46%), Positives = 59/92 (64%)
 Frame = +2

Query: 203 MTKLMEWISLCSAFFAVWYSLIGGYVKHPLIQENMHQIVLSPIYFLILFGLYSVSVILFR 382
           MT L  W+   S F   + S++ G V+ PL  +    I L P+  L++FG+YSV  +L+R
Sbjct: 1   MTNLQRWLFYASLFAIPYLSVVLGTVQTPLTTKYFLHIQLLPLLLLVIFGIYSVWTVLYR 60

Query: 383 VLTFNNCEEAAKELQREIIEAKKDLHERGLRW 478
            LTFN+C EAAKELQ EI EA+KDL  +G R+
Sbjct: 61  TLTFNDCPEAAKELQDEIQEARKDLIAKGFRF 92


>BT030188-1|ABN49327.1|  126|Drosophila melanogaster IP17949p
           protein.
          Length = 126

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -1

Query: 486 NVHHLKPLSCKSFLASIISLCNSFAASSQLLNVKTLKSMTLTEYKPKS 343
           N++ +KPL+   +  S+ + CN  A    L+NV  + S+ L+E + K+
Sbjct: 19  NINGIKPLNSCFYFFSLKTGCNLIAGFEALVNVLQMCSIYLSEMEVKT 66


>BT023906-1|ABA81840.1|  914|Drosophila melanogaster GH18655p
           protein.
          Length = 914

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -1

Query: 420 SFAASSQLLNVKTL-KSMTLTEYKPKSIRKYMGDKTI*CMFSCINGCLT*PPIREYQTA 247
           ++    +++ V  L ++M L  Y PK  R Y+GDK +    + I+ CL    + EYQTA
Sbjct: 546 NYYVGGEIVTVSHLDRTMYLLGYVPKDNRIYLGDKEL----NVISFCLQ-LSVLEYQTA 599


>AJ006524-1|CAA07085.1|  914|Drosophila melanogaster coatomer,
           beta-prime subunit protein.
          Length = 914

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -1

Query: 420 SFAASSQLLNVKTL-KSMTLTEYKPKSIRKYMGDKTI*CMFSCINGCLT*PPIREYQTA 247
           ++    +++ V  L ++M L  Y PK  R Y+GDK +    + I+ CL    + EYQTA
Sbjct: 546 NYYVGGEIVTVSHLDRTMYLLGYVPKDNRIYLGDKEL----NVISFCLQ-LSVLEYQTA 599


>AJ006523-1|CAA07084.1|  914|Drosophila melanogaster coatomer,
           beta-prime subunit protein.
          Length = 914

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -1

Query: 420 SFAASSQLLNVKTL-KSMTLTEYKPKSIRKYMGDKTI*CMFSCINGCLT*PPIREYQTA 247
           ++    +++ V  L ++M L  Y PK  R Y+GDK +    + I+ CL    + EYQTA
Sbjct: 546 NYYVGGEIVTVSHLDRTMYLLGYVPKDNRIYLGDKEL----NVISFCLQ-LSVLEYQTA 599


>AE014134-2340|AAF53294.2|  914|Drosophila melanogaster CG6699-PA
           protein.
          Length = 914

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -1

Query: 420 SFAASSQLLNVKTL-KSMTLTEYKPKSIRKYMGDKTI*CMFSCINGCLT*PPIREYQTA 247
           ++    +++ V  L ++M L  Y PK  R Y+GDK +    + I+ CL    + EYQTA
Sbjct: 546 NYYVGGEIVTVSHLDRTMYLLGYVPKDNRIYLGDKEL----NVISFCLQ-LSVLEYQTA 599


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,875,489
Number of Sequences: 53049
Number of extensions: 523274
Number of successful extensions: 781
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)