Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n24
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...    61   2e-10
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...    27   1.8  
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   1.8  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    27   2.4  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   4.2  
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    26   5.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.8  

>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 24/40 (60%), Positives = 30/40 (75%)
 Frame = +2

Query: 515 GKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDL 634
           G  V   DF GK+ LIYFGFT CPDICPDEL+K++  +D+
Sbjct: 108 GNRVTDNDFKGKFSLIYFGFTRCPDICPDELDKMSAAIDI 147


>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 524 VKSADFLGKWMLIYFGFTHCPDICPDELEKLAE 622
           +K AD+ GKW+ + F       +CP E+   +E
Sbjct: 25  IKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSE 57


>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 75

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 24/73 (32%), Positives = 29/73 (39%)
 Frame = -3

Query: 507 HIFGHFLFASNLVKEYRQNYLRIY*LKTATYFCFSKLFFSFSVKRLLFFFFDIHHKSRQA 328
           HI+G  L    L  +Y Q Y     LK   Y CF     SF    LL +    H   RQ 
Sbjct: 8   HIYGSSLADYCLNAKYGQRYATFSILKLVEYNCFPGFISSF--HSLLTYRKKPH---RQN 62

Query: 327 SSNYNGCCH*LPC 289
           +SN  G    + C
Sbjct: 63  TSNMQGLMRLVAC 75


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 539 FLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSP 658
           FLG+  +I  G T C D  P E  K   V  +   TPS P
Sbjct: 152 FLGQVQVIIHGKTECYDCNPKEPPKTYPVCTIR-STPSQP 190


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 193 NRVSFVFRALSTTPVRQCAVPPKRTPKT 276
           N V F  R L +TP RQ   P   TP T
Sbjct: 122 NPVPFATRLLQSTPHRQLFPPTPSTPST 149


>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 279 YADNMEV-NGSNRC-SWRRLDGFYDVCQKR 362
           Y +N  +  G++ C S  R+ GFYD C++R
Sbjct: 113 YPENFFILRGNHECASINRIYGFYDECKRR 142


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = -1

Query: 464  NIDKITSEFTSSK--LPPIFAFPSCFFLSRSSAS----CFSFLTYIIKAVKPPPTTTVAA 303
            NI K+ S  T  K     IF   S  +L R + S    CFSF+TYI+      P   V +
Sbjct: 3488 NIQKLYSPSTILKDYFSSIFTNYSDLWLFRKNFSYQYACFSFITYILSINNRIPAKLVFS 3547

Query: 302  ID 297
             D
Sbjct: 3548 RD 3549


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 449 TSEFTSSKLPPIFAFPSCFFLSRSSASCFSFLTYIIKAVKPPPTTT 312
           TS  T S  PP  +FPS F  S  ++S  S +      VK   T++
Sbjct: 684 TSSSTVSTPPPTTSFPSTFTTSFITSSSLSSIPNNSTEVKTASTSS 729


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,715,455
Number of Sequences: 5004
Number of extensions: 53923
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)