Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n24
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323...    70   2e-12
09_03_0087 - 12237226-12237346,12237423-12237555,12237641-122377...    49   3e-06
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535...    30   1.4  
05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760     29   3.3  
08_02_0776 - 21083181-21083187,21083256-21083683,21083800-210840...    28   7.7  

>02_01_0449 -
           3229260-3229365,3230264-3230396,3230536-3230625,
           3231097-3231309,3232317-3232407,3232519-3232707,
           3232810-3232920,3233018-3233110
          Length = 341

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 27/39 (69%), Positives = 31/39 (79%)
 Frame = +2

Query: 515 GKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVD 631
           GK V   DF GKW L+YFGFTHCPDICPDEL+K+A  +D
Sbjct: 192 GKPVTQKDFFGKWTLLYFGFTHCPDICPDELQKMALAID 230



 Score = 35.5 bits (78), Expect = 0.038
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +1

Query: 283 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDR-----ERKKQLGKAKIGGSFELVNSE 447
           P++W S    +V GGG+  +    KK   E L       +++  +G A IGG F L+N +
Sbjct: 132 PVSWLSFLLLLVTGGGIIVYYDKEKKRHIEELKNRTSAVKQEPSVGTAAIGGPFNLLNHD 191


>09_03_0087 -
           12237226-12237346,12237423-12237555,12237641-12237730,
           12238992-12239198,12239738-12239813,12240019-12240148,
           12241024-12241121
          Length = 284

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 20/41 (48%), Positives = 28/41 (68%)
 Frame = +2

Query: 512 QGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDL 634
           + K V  +   G W L+YFG+T CPDI P E++K+A+VV L
Sbjct: 129 ENKEVTESKLRGNWTLMYFGYTSCPDIGPAEVQKMADVVKL 169


>11_08_0007 +
           27551173-27551828,27552071-27552282,27553371-27553550,
           27555154-27556187
          Length = 693

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/78 (32%), Positives = 39/78 (50%)
 Frame = +1

Query: 271 KTLMPITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEV 450
           K ++P T  +  AT V GG L   ++Y+ KE      R R++     K GG+  ++N  +
Sbjct: 338 KPIIPATVVATIATAVAGGILAFVVLYILKE-----HRRRQQNRSFDKNGGN--ILNKMM 390

Query: 451 ILSIFLN*ITGEQKMTKN 504
            + IF       +KMTKN
Sbjct: 391 DIKIFSE--EELKKMTKN 406


>05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760
          Length = 289

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 446 SEFTSSKLPPIFAFPSCFFLSRSSASCFSFLTYIIKAVKPPPTT 315
           S+ TSS + P  +  S    S S  +CF+        + PPPTT
Sbjct: 131 SQCTSSAMAPALSPASSSVTSSSGDACFAAAATTTTTMYPPPTT 174


>08_02_0776 -
           21083181-21083187,21083256-21083683,21083800-21084048,
           21084172-21084248,21084351-21084483
          Length = 297

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 512 QGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPP 661
           QG+ ++S     + +L        P+    EL +LA  VD+   + SSPP
Sbjct: 165 QGRYLQSVLRRAQQVLADHSLASSPEAATAELSELASAVDIECMSSSSPP 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,255,876
Number of Sequences: 37544
Number of extensions: 338294
Number of successful extensions: 854
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)