Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29n24
(665 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456569-1|CAG30455.1| 266|Homo sapiens SCO2 protein. 73 7e-13
BC102025-1|AAI02026.1| 266|Homo sapiens SCO cytochrome oxidase ... 73 7e-13
BC102024-1|AAI02025.1| 266|Homo sapiens cytochrome oxidase defi... 73 7e-13
AL021683-1|CAA16671.1| 266|Homo sapiens protein ( Homo sapiens ... 73 7e-13
AF177385-1|AAF05313.1| 266|Homo sapiens cytochrome c oxidase as... 73 7e-13
BC015504-1|AAH15504.1| 301|Homo sapiens SCO cytochrome oxidase ... 71 4e-12
AF295386-1|AAG23836.1| 301|Homo sapiens cytochrome oxidase defi... 71 4e-12
AF183424-1|AAG09693.1| 301|Homo sapiens SCO1/2 protein protein. 71 4e-12
AF131816-1|AAD20051.1| 190|Homo sapiens h-sco1 protein. 71 4e-12
AF026852-1|AAD08641.1| 301|Homo sapiens h-sco1 protein. 71 4e-12
BC021101-1|AAH21101.1| 651|Homo sapiens cofactor required for S... 31 4.9
AK001674-1|BAA91827.1| 651|Homo sapiens protein ( Homo sapiens ... 31 4.9
AF117657-1|AAD22031.2| 651|Homo sapiens thyroid hormone recepto... 31 4.9
AF105421-1|AAD30856.1| 652|Homo sapiens vitamin D3 receptor int... 31 4.9
AJ001515-1|CAA04798.1| 4870|Homo sapiens ryanodine receptor 3 pr... 30 8.5
AB001025-1|BAA23795.1| 4866|Homo sapiens brain ryanodine recepto... 30 8.5
>CR456569-1|CAG30455.1| 266|Homo sapiens SCO2 protein.
Length = 266
Score = 73.3 bits (172), Expect = 7e-13
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +2
Query: 512 QGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPL 664
+G+ ADF G+W+L+YFGFTHCPDICPDELEKL +VV + P PP+
Sbjct: 110 RGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPV 160
>BC102025-1|AAI02026.1| 266|Homo sapiens SCO cytochrome oxidase
deficient homolog 2 (yeast) protein.
Length = 266
Score = 73.3 bits (172), Expect = 7e-13
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +2
Query: 512 QGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPL 664
+G+ ADF G+W+L+YFGFTHCPDICPDELEKL +VV + P PP+
Sbjct: 110 RGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPV 160
>BC102024-1|AAI02025.1| 266|Homo sapiens cytochrome oxidase
deficient homolog 2 protein.
Length = 266
Score = 73.3 bits (172), Expect = 7e-13
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +2
Query: 512 QGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPL 664
+G+ ADF G+W+L+YFGFTHCPDICPDELEKL +VV + P PP+
Sbjct: 110 RGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPV 160
>AL021683-1|CAA16671.1| 266|Homo sapiens protein ( Homo sapiens
cDNA homologous to Yeast SCO1 & SCO2 genes and
C.elegans C01F1.2 gene. ).
Length = 266
Score = 73.3 bits (172), Expect = 7e-13
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +2
Query: 512 QGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPL 664
+G+ ADF G+W+L+YFGFTHCPDICPDELEKL +VV + P PP+
Sbjct: 110 RGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPV 160
>AF177385-1|AAF05313.1| 266|Homo sapiens cytochrome c oxidase
assembly protein isoform 2 protein.
Length = 266
Score = 73.3 bits (172), Expect = 7e-13
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +2
Query: 512 QGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPL 664
+G+ ADF G+W+L+YFGFTHCPDICPDELEKL +VV + P PP+
Sbjct: 110 RGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPV 160
>BC015504-1|AAH15504.1| 301|Homo sapiens SCO cytochrome oxidase
deficient homolog 1 (yeast) protein.
Length = 301
Score = 70.9 bits (166), Expect = 4e-12
Identities = 28/50 (56%), Positives = 37/50 (74%)
Frame = +2
Query: 515 GKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPL 664
G+ D+LG+W+LIYFGFTHCPD+CP+ELEK+ +VVD D + P L
Sbjct: 147 GERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDL 196
Score = 62.9 bits (146), Expect = 1e-09
Identities = 26/51 (50%), Positives = 37/51 (72%)
Frame = +1
Query: 283 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFEL 435
P++WKS+A T +GG L A M +VKKEK E L++ER++ +GK +GG F L
Sbjct: 92 PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSL 142
>AF295386-1|AAG23836.1| 301|Homo sapiens cytochrome oxidase
deficient in yeast homolog 1 protein.
Length = 301
Score = 70.9 bits (166), Expect = 4e-12
Identities = 28/50 (56%), Positives = 37/50 (74%)
Frame = +2
Query: 515 GKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPL 664
G+ D+LG+W+LIYFGFTHCPD+CP+ELEK+ +VVD D + P L
Sbjct: 147 GERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDL 196
Score = 62.9 bits (146), Expect = 1e-09
Identities = 26/51 (50%), Positives = 37/51 (72%)
Frame = +1
Query: 283 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFEL 435
P++WKS+A T +GG L A M +VKKEK E L++ER++ +GK +GG F L
Sbjct: 92 PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSL 142
>AF183424-1|AAG09693.1| 301|Homo sapiens SCO1/2 protein protein.
Length = 301
Score = 70.9 bits (166), Expect = 4e-12
Identities = 28/50 (56%), Positives = 37/50 (74%)
Frame = +2
Query: 515 GKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPL 664
G+ D+LG+W+LIYFGFTHCPD+CP+ELEK+ +VVD D + P L
Sbjct: 147 GERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDL 196
Score = 62.9 bits (146), Expect = 1e-09
Identities = 26/51 (50%), Positives = 37/51 (72%)
Frame = +1
Query: 283 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFEL 435
P++WKS+A T +GG L A M +VKKEK E L++ER++ +GK +GG F L
Sbjct: 92 PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSL 142
>AF131816-1|AAD20051.1| 190|Homo sapiens h-sco1 protein.
Length = 190
Score = 70.9 bits (166), Expect = 4e-12
Identities = 28/50 (56%), Positives = 37/50 (74%)
Frame = +2
Query: 515 GKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPL 664
G+ D+LG+W+LIYFGFTHCPD+CP+ELEK+ +VVD D + P L
Sbjct: 36 GERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDL 85
Score = 39.1 bits (87), Expect = 0.014
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +1
Query: 343 MMYVKKEKQEALDRERKKQLGKAKIGGSFEL 435
M +VKKEK E L++ER++ +GK +GG F L
Sbjct: 1 MKHVKKEKAEKLEKERQRHIGKPLLGGPFSL 31
>AF026852-1|AAD08641.1| 301|Homo sapiens h-sco1 protein.
Length = 301
Score = 70.9 bits (166), Expect = 4e-12
Identities = 28/50 (56%), Positives = 37/50 (74%)
Frame = +2
Query: 515 GKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPL 664
G+ D+LG+W+LIYFGFTHCPD+CP+ELEK+ +VVD D + P L
Sbjct: 147 GERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDL 196
Score = 62.9 bits (146), Expect = 1e-09
Identities = 26/51 (50%), Positives = 37/51 (72%)
Frame = +1
Query: 283 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFEL 435
P++WKS+A T +GG L A M +VKKEK E L++ER++ +GK +GG F L
Sbjct: 92 PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSL 142
>BC021101-1|AAH21101.1| 651|Homo sapiens cofactor required for Sp1
transcriptional activation, subunit 6, 77kDa protein.
Length = 651
Score = 30.7 bits (66), Expect = 4.9
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 220 LSTTPVRQCAVPPKRTPKTLMPIT-WKSMA-ATVVVGGGLTAFMMYVKKEKQEALDRERK 393
++ PV Q A+PPK+ P+TL I+ KS+A A ++ G V + ++ L R+
Sbjct: 125 MTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFN 184
Query: 394 KQL 402
+L
Sbjct: 185 SEL 187
>AK001674-1|BAA91827.1| 651|Homo sapiens protein ( Homo sapiens
cDNA FLJ10812 fis, clone NT2RP4000975. ).
Length = 651
Score = 30.7 bits (66), Expect = 4.9
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 220 LSTTPVRQCAVPPKRTPKTLMPIT-WKSMA-ATVVVGGGLTAFMMYVKKEKQEALDRERK 393
++ PV Q A+PPK+ P+TL I+ KS+A A ++ G V + ++ L R+
Sbjct: 125 MTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFN 184
Query: 394 KQL 402
+L
Sbjct: 185 SEL 187
>AF117657-1|AAD22031.2| 651|Homo sapiens thyroid hormone
receptor-associated protein complex component TRAP80
protein.
Length = 651
Score = 30.7 bits (66), Expect = 4.9
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 220 LSTTPVRQCAVPPKRTPKTLMPIT-WKSMA-ATVVVGGGLTAFMMYVKKEKQEALDRERK 393
++ PV Q A+PPK+ P+TL I+ KS+A A ++ G V + ++ L R+
Sbjct: 125 MTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFN 184
Query: 394 KQL 402
+L
Sbjct: 185 SEL 187
>AF105421-1|AAD30856.1| 652|Homo sapiens vitamin D3 receptor
interacting protein protein.
Length = 652
Score = 30.7 bits (66), Expect = 4.9
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 220 LSTTPVRQCAVPPKRTPKTLMPIT-WKSMA-ATVVVGGGLTAFMMYVKKEKQEALDRERK 393
++ PV Q A+PPK+ P+TL I+ KS+A A ++ G V + ++ L R+
Sbjct: 125 MTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFN 184
Query: 394 KQL 402
+L
Sbjct: 185 SEL 187
>AJ001515-1|CAA04798.1| 4870|Homo sapiens ryanodine receptor 3
protein.
Length = 4870
Score = 29.9 bits (64), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 208 VFRALSTTPVRQCAVPPKRTPKTLMPITWKSM 303
+FR+ PV QC PP+ +T+ P+ W M
Sbjct: 1474 IFRSEEKNPVPQC--PPRLDVQTIQPVLWSRM 1503
>AB001025-1|BAA23795.1| 4866|Homo sapiens brain ryanodine receptor
protein.
Length = 4866
Score = 29.9 bits (64), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 208 VFRALSTTPVRQCAVPPKRTPKTLMPITWKSM 303
+FR+ PV QC PP+ +T+ P+ W M
Sbjct: 1475 IFRSEEENPVPQC--PPRLDVQTIQPVLWSRM 1504
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,618,485
Number of Sequences: 237096
Number of extensions: 1757897
Number of successful extensions: 3640
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3640
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -