Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n24
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58761-6|AAB00716.1|  312|Caenorhabditis elegans Hypothetical pr...    65   4e-11
AF098987-4|AAC67429.1|  496|Caenorhabditis elegans Hypothetical ...    31   0.97 
Z78015-4|CAB01436.2|  149|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U61958-3|AAB03180.2|  149|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z82282-5|CAB05270.1|  555|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>U58761-6|AAB00716.1|  312|Caenorhabditis elegans Hypothetical
           protein C01F1.2 protein.
          Length = 312

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 24/50 (48%), Positives = 37/50 (74%)
 Frame = +2

Query: 515 GKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPL 664
           GK+  S +  G W+L+YFGFT+CPDICPDE+EK+ +VV++ +    + P+
Sbjct: 148 GKMEGSQELRGNWLLMYFGFTNCPDICPDEIEKMVKVVEIIEAKKDATPI 197



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 21/52 (40%), Positives = 35/52 (67%)
 Frame = +1

Query: 292 WKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSE 447
           WK++  T  VGG   A + Y+KK + +  ++ RK+  GKA+IGG +EL+N++
Sbjct: 96  WKTVLGTFAVGGTCLAALFYIKKIRLDEREKHRKQTAGKARIGGEWELMNTD 147


>AF098987-4|AAC67429.1|  496|Caenorhabditis elegans Hypothetical
           protein F40H3.1a protein.
          Length = 496

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = -1

Query: 449 TSEFTSSKLPPIFAFPSCFFL-SRSSASCFSFL---TYIIKAVKPPPTTTVAA 303
           T E T  +LP +  F +C F+ S+SSA C + L   TYI     PP + T +A
Sbjct: 163 TFESTPKELPTVTKFTNCTFIRSQSSARCKAILPDTTYI--CTLPPVSATFSA 213


>Z78015-4|CAB01436.2|  149|Caenorhabditis elegans Hypothetical
           protein R02D5.7 protein.
          Length = 149

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 569 GFTHCPDICPDELEKLAEVVD 631
           G+ +C D+ PD+L+K+AE  D
Sbjct: 126 GYENCQDMTPDQLKKIAEQAD 146


>U61958-3|AAB03180.2|  149|Caenorhabditis elegans Hypothetical
           protein C25A8.2 protein.
          Length = 149

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 569 GFTHCPDICPDELEKLAEVVD 631
           G+ +C D+ PD+L+K+AE  D
Sbjct: 126 GYENCQDMTPDQLKKIAEQAD 146


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 518 KLVKSADFLGKWMLIYFGFTHCPDICPDEL 607
           K++   D+ GKW++++F       +CP E+
Sbjct: 53  KVISDQDYKGKWLVMFFYPLDFTFVCPTEI 82


>U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical
           protein T10H10.3 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -1

Query: 464 NIDKITSEFTSSKLPPIFAFPSCFFLSRSSASCFSFLTYIIKAVKPPPTTT 312
           +++    ++   + PP     +   +SR+  S  +  T I+ +V PPPT+T
Sbjct: 11  SVEGTQGKYVKRESPPTVPSLAATAVSRTRRSPIAASTLILSSVPPPPTST 61


>Z82282-5|CAB05270.1|  555|Caenorhabditis elegans Hypothetical
           protein T07G12.5 protein.
          Length = 555

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = -1

Query: 401 SCFFLSRSSASCFSFLTYIIKAVKPPPTTTVAAIDFHVIG---ISVFGVLLGGTAHCRTG 231
           SCF     S   ++    I K  +PPP+ T  A     IG    +++GV  G T +    
Sbjct: 285 SCFAAMIESIGDYNLCAKISKQSRPPPSNTNRAFVVEGIGCILAALWGVGTGVTTYAENI 344

Query: 230 VVLNARNTKLTRFRSMEFILLF 165
            +++   TK+T   +M+   +F
Sbjct: 345 AIMSV--TKVTSRITMQMAGVF 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,127,558
Number of Sequences: 27780
Number of extensions: 308433
Number of successful extensions: 845
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)