Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n23
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    33   0.036
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    30   0.34 
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    28   1.4  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    28   1.4  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.4  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    27   3.1  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   4.1  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    26   4.1  
SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa...    26   5.5  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    25   7.2  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.5  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   9.5  
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    25   9.5  
SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyce...    25   9.5  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    25   9.5  

>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +3

Query: 417 SARNEKHGGQQNGGDINTALKHLDEMQQADKNVSKAMICDISKQVDTQMS 566
           S +N K  G  NG D +  ++ L ++ Q+D+++ +  + D +K+ +  M+
Sbjct: 646 STKNVKRDGDHNGDDSDYVIRSLGDVLQSDEDIERWHLYDYTKEEEDTMA 695


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 116 PSLDMEYGYAS*SNEGRHDWSHGTQHYPRFNSNENKSTKRR 238
           PSLD+E GY    N G+  + HG  + P    +EN+   +R
Sbjct: 336 PSLDLEEGYIMDENYGKDVYKHGISNVP---DDENEDDLQR 373


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 26/106 (24%), Positives = 47/106 (44%)
 Frame = +3

Query: 117  LPWIWNTAMLHDQMKEGTTGLTELNTILDSTQTKINRLKGVCGSITNFFRVKLNSKDNIS 296
            +PWI +   + D++    + +TEL T L +T            S   FF    N  + I 
Sbjct: 1197 VPWIPSGKSMVDELN---SDITELKTTLKTTLLMYGENPDEPTSSARFFN---NLNEIIL 1250

Query: 297  YSSDPSYVGQTNFQRDYVPVSNRIDSVNAGLGPDDTEMSGSARNEK 434
                 S V Q   +++      R+ ++ A +  ++ E SGS++NE+
Sbjct: 1251 EYKKASTVNQ-KMEKEEELAFLRLQALKASVKSNNAENSGSSKNEE 1295


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 134 YGYAS*SNEGRHDWSHGTQHYPRFNSNENKSTKRR 238
           Y Y+S S    H  SHGT+H      N+N + K R
Sbjct: 200 YDYSS-SGSHTHGGSHGTEHRGGSYGNDNTANKTR 233


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = +3

Query: 408 MSGSARNEKHGGQQNGGDINTALKHLD-EMQQADKNVSKAMICDISKQVDTQ----MSKL 572
           M  + +N K   +Q G D   ++   D EM+   ++ +   + D  +++  Q    +SKL
Sbjct: 1   MDSANKNTKIFAEQLGNDFTISVDDEDMEMEYPLRSSTPTKVIDDQREILLQKASRISKL 60

Query: 573 DQMICQADRAQN 608
           D+ +C+ +   N
Sbjct: 61  DEALCELNNESN 72


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +3

Query: 408 MSGSARNEKHGGQQNGGDINTALKHLDEMQQADKNVSKAMICDISKQVDTQ 560
           MS   R  K  GQ NG  I  ALK +DE+     N   A+   +   +DTQ
Sbjct: 179 MSSQKRLGKLMGQVNG--IIDALKRVDEIVVPQNNFQSALEHAVPVSLDTQ 227


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 557 CINLFTNITNHRFADILIGLLHLI 486
           C++ F  + NH  ADI I +L L+
Sbjct: 146 CVSTFLELMNHENADITITVLELL 169


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 330 NFQRDYVPVSNRIDSVNAGLGPDDTEMSGSARNEKHGGQQNGGDINTALK 479
           NF+ DY  ++NR   V  G G          +N+K  G   GG INT ++
Sbjct: 404 NFEDDYGTLANRDLIVTRGKG------FRQEKNKKKRGSYRGGRINTEVR 447


>SPBP19A11.01 |||glycine decarboxylase complex subunit
           H|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 169

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 345 YVPVSNRIDSVNAGLGPDDTEMSGSARNE 431
           Y PVS  + S+N  LG    ++S S   E
Sbjct: 107 YSPVSGTVTSINESLGDSPDKVSSSPEEE 135


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 305 RPQLRRSNEFPKRLRAGFEPNRLCERRAWPRRYRNVRKRAK*KTWRSTKWRRHQYGSETF 484
           R +  RSN+   R R+  E +   +R    R YRN R   + +T       R +Y S  F
Sbjct: 173 RDRHHRSNQDRSRERSDNEQHSSDKREHSRRSYRNDRNNWRERTHNDRYRHRDKYDSGYF 232

Query: 485 R 487
           +
Sbjct: 233 K 233


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 102 PSRPCLPWIWNTAMLHDQMKEGTTGLTELNTILDSTQTK 218
           P +  +  +WN  +LH++  EG   LTEL   ++S Q +
Sbjct: 2   PLQSLVKALWN--VLHEEESEGYPDLTELIAEVESYQQR 38


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -2

Query: 296 RNIIFGIQFDSEEIRDATANAF*SIYFRLS*I*DSVEFRETSRAF 162
           R  ++ I  D+++ RD+ A A   +++ L    + V   E +R+F
Sbjct: 255 RKTVYKIPTDNDDSRDSVAYALQRVFYNLEKQREPVSTTELTRSF 299


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 61  RDGRGSGVISSPRRRAALAFLGYGIRLCFM 150
           +DG  S +I  PRR   L FL   + L F+
Sbjct: 211 KDGETSDLIKIPRRAYELRFLSRSLMLNFL 240


>SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 471 ALKHLDEMQQADKNVSKAMICDISKQVDTQM 563
           A+KHL ++  A KN ++   CD+ ++V  ++
Sbjct: 2   AIKHLPKILIARKNKAEVNHCDLKRRVSIKI 32


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 375 VNAGLGPDDTEMSGSARNEKH 437
           V++G  PDD   S S  N+KH
Sbjct: 196 VSSGPAPDDMPSSASNHNQKH 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,495
Number of Sequences: 5004
Number of extensions: 52964
Number of successful extensions: 141
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)