Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29n23
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768 31 0.61
12_02_0330 - 17612867-17613161,17613376-17613459,17613554-176137... 31 0.80
06_02_0266 - 13593346-13594151,13594425-13594743 31 1.1
05_07_0046 + 27310074-27310229,27310331-27310459,27311331-273114... 30 1.4
06_01_0972 - 7509148-7509516,7509748-7509887,7509968-7510035,751... 29 3.2
01_01_0867 - 6773411-6774682,6775008-6775643 28 5.6
06_03_0009 + 15350387-15350622,15351122-15351363,15351484-153516... 28 7.5
09_02_0402 + 8582235-8582360,8582452-8582552,8584328-8584425,858... 27 9.9
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 27 9.9
03_05_0152 + 21291162-21291287,21291379-21291479,21293257-212933... 27 9.9
03_04_0085 - 17182662-17182963,17183044-17183101,17183564-171836... 27 9.9
02_05_0036 - 25292150-25293124,25294021-25294206,25294704-252948... 27 9.9
>12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768
Length = 1004
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = +3
Query: 378 NAGLGPDDTEMSGSARNEKHGGQQNGGDINTALKHLDEMQQADKNVSKAMICDISKQVDT 557
N D+ +GSA H D + LKH+D+M+ +++ S + CD S V
Sbjct: 527 NGSTDGSDSVTTGSASTSSHD------DRSKKLKHVDDMRSLERDTSNSEPCDRSVSVSV 580
Query: 558 QMSKLDQMICQADR 599
++ I + D+
Sbjct: 581 DKAEKGDGISKMDK 594
>12_02_0330 -
17612867-17613161,17613376-17613459,17613554-17613744,
17614085-17614995,17615081-17615252,17615337-17615412,
17615515-17615634,17615841-17616005,17616096-17616186,
17616644-17616785,17616848-17617042,17617132-17617185,
17617299-17617397,17618181-17618296,17618376-17618442
Length = 925
Score = 31.1 bits (67), Expect = 0.80
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 23 LGSKTELYAMRANGMGEVLA*Y-PLRAAEPPLPSLDMEYGYAS*SNEGRHDWSHGTQHYP 199
LGS++ + R +G E+L+ + PL+ PL S + S + W+ HYP
Sbjct: 494 LGSQSWMQMRRPDGSSEILSGFQPLKDTRNPLSSFPSQI-----SGNRSNTWNTINVHYP 548
Query: 200 RFNSNEN 220
N+N N
Sbjct: 549 DQNANHN 555
>06_02_0266 - 13593346-13594151,13594425-13594743
Length = 374
Score = 30.7 bits (66), Expect = 1.1
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 2/153 (1%)
Frame = +3
Query: 132 NTAMLHDQMKEGTTGLTELNTILDSTQTKINRLKGVCGSITNFFRVKLNSKDNISYSSDP 311
NTA H+ + L + +T++ Q + L G + ++++ I+ +
Sbjct: 208 NTAENHEVKEMSRDHLVQKDTVIGEHQEIV--LNKFHGELLVPTSSRIDADVAIAGTKGG 265
Query: 312 SYVGQTNFQRDYVPVSNRIDSVNAGLGPDDTEMSGSARNEKHGGQQNGGDINTALKHLDE 491
+Y ++ Y +DS + P DT+ G A + Q+G I+ A
Sbjct: 266 TYNSPADYMVGYPTHFFNVDSARISITPPDTQDLGGATFSNNKDDQHGRTISGA------ 319
Query: 492 MQQADKNVSK--AMICDISKQVDTQMSKLDQMI 584
+ +NV++ A ICD S T+ LD +
Sbjct: 320 -ASSSQNVARHTAPICDASGVSGTEWDSLDPFL 351
>05_07_0046 +
27310074-27310229,27310331-27310459,27311331-27311496,
27311577-27311624,27312189-27312274,27312385-27312453,
27312549-27312593,27312697-27312759,27312848-27312924,
27313125-27313140
Length = 284
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 519 KAMICDISKQVDTQMSKLDQMICQADRAQNSLQRQNKQLR 638
K M D+++++D Q+ +D+M + DRA L+ N +L+
Sbjct: 210 KNMASDMNEELDRQVPLMDEMDEKVDRANTDLKNTNVRLK 249
>06_01_0972 -
7509148-7509516,7509748-7509887,7509968-7510035,
7510504-7510548,7510657-7510676,7510828-7510890,
7510979-7511190,7511238-7511334
Length = 337
Score = 29.1 bits (62), Expect = 3.2
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 2/125 (1%)
Frame = +3
Query: 282 KDNISYSSDPSYVGQTNFQRDYVPVSNRIDSVNAGLGPDDTEMSGSARNEKHGGQQ--NG 455
K + +S DP + +R + R+D + A E+ +A+ + G +Q G
Sbjct: 29 KSHGGFSRDPLAASELLAERRVTDLKRRLDDLRAASDAAAAELE-AAKRAREGAEQELRG 87
Query: 456 GDINTALKHLDEMQQADKNVSKAMICDISKQVDTQMSKLDQMICQADRAQNSLQRQNKQL 635
G + A+ A +A I + +++ S LD + + D ++ Q QL
Sbjct: 88 GQVQVAI------AAASIQALEATISHLQEEISKAGSDLDALKGKGDIERDEFISQMDQL 141
Query: 636 RSFLR 650
+ +R
Sbjct: 142 NTKIR 146
>01_01_0867 - 6773411-6774682,6775008-6775643
Length = 635
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +3
Query: 135 TAMLHDQMKEGTTGLTELNTILDSTQTKINRLKGVCGSITNFFRVKLNSKDNISYSS 305
T L D++ EG+ G TI ST + +LKG+ G FR ++ + I +++
Sbjct: 335 TRNLSDKLGEGSFGSVFKGTIAGSTIVAVKKLKGL-GHTEKQFRTEVQTVGMIQHTN 390
>06_03_0009 +
15350387-15350622,15351122-15351363,15351484-15351648,
15352101-15352198,15352210-15352590
Length = 373
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 54 GQTGWE--RFWRDILSAPPSRPCLPWIWNTAMLHDQMKEGTTGLTELNTILD 203
G +G+E RFW DI AP + + WN KE T+ LNT D
Sbjct: 196 GISGFEKNRFWEDISGAPIYQRRISCRWNIQGDAQHDKERTSKFIILNTRAD 247
>09_02_0402 +
8582235-8582360,8582452-8582552,8584328-8584425,
8585089-8585151,8586540-8586721,8586874-8587146
Length = 280
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 434 TWRSTKWRRHQYGSETFR*DAASR*ECQQSD 526
T R+ +W+ YGS T R DA R C+Q D
Sbjct: 181 TTRTWRWQGEDYGSPTRRGDARGR--CRQVD 209
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Frame = +3
Query: 468 TALKHLDEMQQADKNVSKAMICD----ISKQVDTQMSKLDQMICQADRAQNSLQRQNKQL 635
T L+ + Q+A+K V A+IC+ +SK D+QM++L++ I + ++ L+ ++
Sbjct: 759 TLLEKIAVYQRANKEV--AIICNHQRSVSKSHDSQMTRLNEKIDELKAQRDELKADLSKV 816
Query: 636 R 638
R
Sbjct: 817 R 817
>03_05_0152 +
21291162-21291287,21291379-21291479,21293257-21293354,
21294016-21294068,21295465-21295659,21295812-21296084
Length = 281
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 434 TWRSTKWRRHQYGSETFR*DAASR*ECQQSD 526
T R+ +W+ YGS T R DA R C+Q D
Sbjct: 182 TARTWRWQSEDYGSPTRRGDARGR--CRQVD 210
>03_04_0085 -
17182662-17182963,17183044-17183101,17183564-17183638,
17183730-17183864,17183986-17184165,17184315-17184365,
17184537-17184637,17185562-17185620,17185701-17185816,
17186668-17186853,17187337-17187399,17187440-17187521,
17188221-17188312,17189153-17189296,17190056-17190136,
17190815-17190898,17191465-17191566,17191922-17192017,
17192239-17192299,17192418-17192521
Length = 723
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 132 NTAMLHDQMKEGTTGLTELNTILDSTQTKINRL 230
N LHDQ+++ L+++ T+L QT+I +
Sbjct: 95 NLVSLHDQIRDCDNILSQMETVLTGFQTEIGSI 127
>02_05_0036 - 25292150-25293124,25294021-25294206,25294704-25294874,
25295135-25295353,25295461-25295712,25295802-25295903,
25296487-25296684,25296762-25297046,25297640-25297709,
25297797-25297970,25298825-25298952,25299059-25299163,
25299686-25300030,25300361-25300563,25300964-25301045,
25301667-25301744
Length = 1190
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 369 DSVNAGLGPDDTEMSGSARNEKHGGQQNGGD 461
DS + + P DT S + R+ +G ++NG D
Sbjct: 911 DSESQKVQPHDTAFSANGRSSANGAEENGKD 941
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,106,790
Number of Sequences: 37544
Number of extensions: 357198
Number of successful extensions: 1157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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